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| Mutant Information |
|---|
| Mutant Name | FN3721-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3721-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1180096 | G-A | HET | ||
| SBS | Chr1 | 29019970 | C-G | HET | ||
| SBS | Chr1 | 29607748 | C-T | HET | ||
| SBS | Chr1 | 7839440 | G-A | HET | ||
| SBS | Chr10 | 15555690 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g29970 |
| SBS | Chr11 | 8797518 | T-C | Homo | ||
| SBS | Chr12 | 15613360 | A-G | HET | ||
| SBS | Chr12 | 23026887 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g37519 |
| SBS | Chr12 | 8683675 | A-G | HET | ||
| SBS | Chr2 | 29401125 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g48030 |
| SBS | Chr2 | 2962270 | T-G | HET | ||
| SBS | Chr3 | 4777100 | T-A | HET | ||
| SBS | Chr3 | 7946743 | G-T | HET | ||
| SBS | Chr4 | 10367959 | T-C | HET | ||
| SBS | Chr4 | 12277802 | C-G | Homo | ||
| SBS | Chr4 | 3126498 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06030 |
| SBS | Chr4 | 9087679 | C-T | HET | ||
| SBS | Chr5 | 12212713 | C-A | Homo | ||
| SBS | Chr5 | 18061413 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g31070 |
| SBS | Chr7 | 16697957 | C-A | Homo | STOP_GAINED | LOC_Os07g28530 |
| SBS | Chr7 | 3424827 | A-T | HET | ||
| SBS | Chr7 | 9931286 | C-T | HET | ||
| SBS | Chr8 | 1177925 | T-C | HET | ||
| SBS | Chr9 | 20490214 | G-T | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 7118883 | 7118884 | 1 | LOC_Os04g12880 |
| Deletion | Chr5 | 7886800 | 7886805 | 5 | |
| Deletion | Chr11 | 8803617 | 8803618 | 1 | LOC_Os11g15530 |
| Deletion | Chr9 | 10026758 | 10026785 | 27 | |
| Deletion | Chr8 | 11315545 | 11315554 | 9 | |
| Deletion | Chr10 | 15331776 | 15331779 | 3 | |
| Deletion | Chr12 | 20310942 | 20310945 | 3 | LOC_Os12g33650 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 10837772 | 10837773 | 2 |
Inversions: 9
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 4969280 | 4990696 | LOC_Os03g09970 |
| Inversion | Chr3 | 4969290 | 4990703 | LOC_Os03g09970 |
| Inversion | Chr8 | 7845589 | 8376830 | LOC_Os08g13970 |
| Inversion | Chr10 | 7965023 | 7998446 | |
| Inversion | Chr10 | 7965037 | 7998473 | |
| Inversion | Chr8 | 8121528 | 9113738 | LOC_Os08g13650 |
| Inversion | Chr4 | 19309455 | 19354466 | |
| Inversion | Chr3 | 30499208 | 30653878 | LOC_Os03g53430 |
| Inversion | Chr3 | 30501629 | 30653968 | LOC_Os03g53430 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5515912 | Chr7 | 27149625 | |
| Translocation | Chr10 | 5958347 | Chr7 | 27148975 | LOC_Os10g10780 |
| Translocation | Chr5 | 28233059 | Chr4 | 8207113 | 2 |