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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7303248	C-T	HET
SBS	Chr1	8844083	G-T	HET
SBS	Chr2	447828	G-T	Homo
SBS	Chr2	12083559	G-A	Homo
SBS	Chr3	13520878	C-T	HET
SBS	Chr3	21069188	T-C	HET
SBS	Chr3	33248281	G-C	HET
SBS	Chr3	35571612	G-A	HET
SBS	Chr4	5086962	G-A	HET
SBS	Chr4	21350543	G-A	Homo
SBS	Chr4	30931111	T-C	Homo
SBS	Chr4	34872414	C-G	HET
SBS	Chr5	2495431	A-C	HET
SBS	Chr5	4666786	A-G	HET
SBS	Chr6	9993231	G-A	HET
SBS	Chr6	13906678	G-A	HET	STOP_GAINED	LOC_Os06g23800
SBS	Chr6	24862064	G-A	HET
SBS	Chr8	11018663	G-A	HET
SBS	Chr9	16204207	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g26680
SBS	Chr9	21339193	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g37000
SBS	Chr9	22829924	C-G	Homo
SBS	Chr10	4965685	G-A	HET
SBS	Chr10	6989435	G-A	HET
SBS	Chr10	17756380	C-A	HET
SBS	Chr11	8464552	G-A	HET
SBS	Chr11	10667584	G-A	Homo	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	11329202	G-A	HET
SBS	Chr11	15574253	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g27050
SBS	Chr11	16346099	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g28400
SBS	Chr12	12748489	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g22590
SBS	Chr12	21724691	T-C	Homo

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	6935399	6935405	6
Deletion	Chr4	7071480	7071481	1
Deletion	Chr1	7129432	7129433	1	LOC_Os01g12880
Deletion	Chr7	7736596	7736602	6
Deletion	Chr5	8914886	8914889	3
Deletion	Chr9	12151718	12151722	4
Deletion	Chr5	14927459	14927481	22
Deletion	Chr9	15813745	15813747	2
Deletion	Chr11	19424658	19424666	8
Deletion	Chr10	19876726	19876727	1
Deletion	Chr2	21132856	21132862	6
Deletion	Chr9	21477001	21690000	212999	46
Deletion	Chr9	21695001	21923000	227999	41
Deletion	Chr9	21936001	22197000	260999	44
Deletion	Chr9	22205001	22334000	128999	30
Deletion	Chr9	22341001	22733000	391999	70
Deletion	Chr7	25837795	25837802	7
Deletion	Chr8	26367549	26367565	16
Deletion	Chr2	28013996	28014007	11

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	1074565	1074565	1	LOC_Os04g02780
Insertion	Chr5	21092488	21092488	1
Insertion	Chr8	3017826	3017826	1
Insertion	Chr3	24204953	24205260	308

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	22138466	22138585	LOC_Os10g41220
Inversion	Chr6	26932526	27179656	LOC_Os06g44940
Inversion	Chr6	26932529	27184329

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	19808836	Chr7	13487005
Translocation	Chr3	25538148	Chr1	2883912

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