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| Mutant Information |
|---|
| Mutant Name | FN3727-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3727-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17089749 | G-A | Homo | ||
| SBS | Chr10 | 6433961 | G-C | Homo | ||
| SBS | Chr10 | 8969233 | C-T | Homo | ||
| SBS | Chr11 | 14183016 | G-A | HET | ||
| SBS | Chr11 | 21375365 | G-A | HET | ||
| SBS | Chr11 | 24424443 | C-G | HET | ||
| SBS | Chr11 | 9735826 | G-A | HET | ||
| SBS | Chr12 | 15186702 | T-A | Homo | ||
| SBS | Chr12 | 21838920 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g35840 |
| SBS | Chr2 | 25979678 | A-G | Homo | ||
| SBS | Chr3 | 19266507 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g33680 |
| SBS | Chr3 | 34470206 | A-G | HET | ||
| SBS | Chr4 | 26950075 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g45550 |
| SBS | Chr4 | 31774865 | A-G | HET | ||
| SBS | Chr6 | 13531885 | T-C | HET | ||
| SBS | Chr6 | 13578431 | A-G | HET | ||
| SBS | Chr6 | 16595957 | T-A | HET | ||
| SBS | Chr6 | 20565593 | G-A | HET | ||
| SBS | Chr6 | 21210312 | T-C | HET | ||
| SBS | Chr6 | 2317739 | G-A | HET | ||
| SBS | Chr7 | 10671039 | A-G | Homo | ||
| SBS | Chr7 | 67111 | T-G | Homo | ||
| SBS | Chr8 | 10519098 | C-T | Homo | ||
| SBS | Chr8 | 13574127 | G-A | Homo | ||
| SBS | Chr8 | 17494847 | C-T | HET | ||
| SBS | Chr9 | 1533104 | A-T | Homo |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 1904285 | 1904289 | 4 | |
| Deletion | Chr6 | 3148197 | 3148198 | 1 | |
| Deletion | Chr12 | 12029895 | 12029896 | 1 | |
| Deletion | Chr10 | 13084870 | 13084871 | 1 | |
| Deletion | Chr5 | 16542001 | 16568000 | 25999 | 6 |
| Deletion | Chr6 | 17549557 | 17549558 | 1 | |
| Deletion | Chr2 | 21068322 | 21068323 | 1 | |
| Deletion | Chr6 | 21206168 | 21206179 | 11 | |
| Deletion | Chr11 | 23840537 | 23840553 | 16 | |
| Deletion | Chr5 | 24161133 | 24161142 | 9 | |
| Deletion | Chr5 | 27816315 | 27816316 | 1 | |
| Deletion | Chr4 | 30778952 | 30778953 | 1 | |
| Deletion | Chr1 | 32839718 | 32839721 | 3 | LOC_Os01g56860 |
Insertions: 6
No Inversion
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3071262 | Chr3 | 13348750 | LOC_Os04g05940 |
| Translocation | Chr9 | 4920900 | Chr1 | 19588631 | |
| Translocation | Chr5 | 16563563 | Chr4 | 19786430 | |
| Translocation | Chr5 | 16564756 | Chr4 | 19786432 | |
| Translocation | Chr11 | 16669842 | Chr7 | 28487475 | |
| Translocation | Chr10 | 18388016 | Chr2 | 26688739 | LOC_Os10g34470 |
| Translocation | Chr10 | 18389950 | Chr2 | 26688737 | LOC_Os10g34470 |
| Translocation | Chr11 | 18402825 | Chr3 | 14392179 | LOC_Os11g31490 |
| Translocation | Chr2 | 33235327 | Chr1 | 3497542 |