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| Mutant Information |
|---|
| Mutant Name | FN3728-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3728-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14479663 | C-T | Homo | ||
| SBS | Chr1 | 16160467 | T-G | Homo | ||
| SBS | Chr1 | 42200491 | C-T | Homo | ||
| SBS | Chr1 | 6660767 | G-A | Homo | ||
| SBS | Chr11 | 3563034 | A-G | Homo | ||
| SBS | Chr12 | 21779371 | C-T | Homo | ||
| SBS | Chr2 | 25915691 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g43040 |
| SBS | Chr2 | 33585310 | T-G | HET | ||
| SBS | Chr3 | 22479548 | C-T | HET | ||
| SBS | Chr3 | 2965944 | C-A | HET | ||
| SBS | Chr3 | 32958378 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g57854 |
| SBS | Chr4 | 22349435 | C-T | Homo | ||
| SBS | Chr5 | 20823221 | C-A | HET | ||
| SBS | Chr5 | 4502626 | G-A | HET | ||
| SBS | Chr5 | 6720493 | A-T | HET | ||
| SBS | Chr6 | 2496979 | G-A | HET | ||
| SBS | Chr6 | 9159305 | C-G | Homo | ||
| SBS | Chr7 | 17222023 | A-T | Homo | ||
| SBS | Chr7 | 19509015 | T-C | HET | ||
| SBS | Chr9 | 19858830 | C-T | HET | ||
| SBS | Chr9 | 8496348 | A-G | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 589101 | 589102 | 1 | LOC_Os01g02090 |
| Deletion | Chr10 | 8728114 | 8728115 | 1 | |
| Deletion | Chr1 | 15873776 | 15873779 | 3 | |
| Deletion | Chr12 | 16351590 | 16351595 | 5 | |
| Deletion | Chr12 | 16351613 | 16351618 | 5 | |
| Deletion | Chr10 | 18398281 | 18398282 | 1 | |
| Deletion | Chr9 | 18950035 | 18950038 | 3 | |
| Deletion | Chr9 | 19026625 | 19026641 | 16 | |
| Deletion | Chr4 | 22560337 | 22560346 | 9 | |
| Deletion | Chr3 | 24703822 | 24703823 | 1 | |
| Deletion | Chr5 | 24964026 | 24964039 | 13 | |
| Deletion | Chr1 | 27428083 | 27428084 | 1 | |
| Deletion | Chr7 | 29086688 | 29086689 | 1 | |
| Deletion | Chr7 | 29550001 | 29616000 | 65999 | 11 |
| Deletion | Chr4 | 34935143 | 34935144 | 1 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 16657288 | 16657289 | 2 | |
| Insertion | Chr10 | 8667874 | 8667874 | 1 | |
| Insertion | Chr11 | 20961516 | 20961516 | 1 | |
| Insertion | Chr2 | 35053358 | 35053358 | 1 | LOC_Os02g57210 |
| Insertion | Chr2 | 3574739 | 3574739 | 1 | |
| Insertion | Chr4 | 4021831 | 4021831 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 9780929 | 9781187 | LOC_Os08g16030 |
| Inversion | Chr11 | 10773503 | 10773932 | |
| Inversion | Chr2 | 25917609 | 26380171 | LOC_Os02g43700 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 164478 | Chr5 | 14966498 | |
| Translocation | Chr4 | 1682394 | Chr2 | 21394561 | |
| Translocation | Chr6 | 2142683 | Chr2 | 25856417 | 2 |
| Translocation | Chr6 | 2143318 | Chr2 | 26380183 | 2 |
| Translocation | Chr11 | 3555320 | Chr6 | 15277663 | LOC_Os06g26110 |
| Translocation | Chr11 | 3555396 | Chr1 | 31794196 | |
| Translocation | Chr6 | 15277663 | Chr1 | 31794196 | LOC_Os06g26110 |