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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10374586	G-A	HET	INTERGENIC
SBS	Chr1	11249199	A-G	HET	INTERGENIC
SBS	Chr1	34947763	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60430
SBS	Chr1	3579598	C-T	HOMO	INTRON
SBS	Chr1	4091770	T-C	HOMO	INTRON
SBS	Chr10	13397231	C-A	HET	INTRON
SBS	Chr10	13496673	T-C	HET	UTR_3_PRIME
SBS	Chr11	22096944	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g37420
SBS	Chr11	26736775	C-T	HOMO	INTRON
SBS	Chr12	25960158	G-A	HOMO	INTERGENIC
SBS	Chr2	11141588	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g19090
SBS	Chr2	12731435	C-T	HOMO	INTERGENIC
SBS	Chr2	21768795	A-G	HOMO	INTRON
SBS	Chr2	2728303	T-G	HET	INTERGENIC
SBS	Chr2	30395391	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g49720
SBS	Chr2	3428341	C-T	HET	INTERGENIC
SBS	Chr4	10361641	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr4	22572688	A-T	HOMO	INTRON
SBS	Chr4	9229667	C-G	HOMO	INTERGENIC
SBS	Chr4	9636856	G-A	HOMO	INTERGENIC
SBS	Chr5	10163049	A-G	HET	INTERGENIC
SBS	Chr5	14017108	C-T	HET	INTERGENIC
SBS	Chr5	756995	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	29627273	A-T	HOMO	INTRON
SBS	Chr6	3920990	G-A	HET	INTRON
SBS	Chr6	6169586	A-G	HET	INTERGENIC
SBS	Chr6	7386459	C-T	HET	INTERGENIC
SBS	Chr7	22694727	A-G	HET	INTERGENIC
SBS	Chr7	26756789	G-A	HOMO	INTRON
SBS	Chr8	16060546	T-A	HET	INTERGENIC
SBS	Chr9	14075924	G-A	HOMO	INTERGENIC
SBS	Chr9	17071614	T-C	HOMO	INTERGENIC
SBS	Chr9	5406018	A-T	HET	INTERGENIC
SBS	Chr9	8837301	C-T	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2970784	2975533	4749	LOC_Os10g05890
Deletion	Chr9	4482348	4482355	7	LOC_Os09g08600
Deletion	Chr6	5577873	5577990	117	LOC_Os06g10690
Deletion	Chr8	7684806	7684809	3	LOC_Os08g12920
Deletion	Chr2	9916782	9916785	3	LOC_Os02g17292
Deletion	Chr6	12278266	12278269	3
Deletion	Chr6	15619179	15619185	6
Deletion	Chr8	18023788	18023791	3	LOC_Os08g29370
Deletion	Chr2	18815044	18815052	8	LOC_Os02g31850
Deletion	Chr12	22376842	22376853	11
Deletion	Chr4	27229571	27229573	2
Deletion	Chr4	33121423	33121428	5
Deletion	Chr1	38794534	38794535	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	17835352	17835355	4
Insertion	Chr3	24562017	24562017	1
Insertion	Chr4	35331614	35331614	1
Insertion	Chr4	4260793	4260796	4
Insertion	Chr6	25859903	25859903	1
Insertion	Chr6	8418697	8418698	2
Insertion	Chr9	8981681	8981682	2

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2970818	Chr2	34194835	LOC_Os10g05890
Translocation	Chr10	2975517	Chr2	34194803
Translocation	Chr6	5577985	Chr2	119892	2

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