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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13129417	C-G	HET
SBS	Chr1	24097961	T-C	HET
SBS	Chr1	36243310	C-A	HET
SBS	Chr10	22824965	G-A	Homo
SBS	Chr10	22824968	A-C	Homo
SBS	Chr10	22824969	G-T	Homo
SBS	Chr10	7133946	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g12770
SBS	Chr11	13170954	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22910
SBS	Chr12	25648495	G-A	Homo
SBS	Chr12	2788060	T-A	HET
SBS	Chr2	22992885	G-T	Homo
SBS	Chr3	13918601	G-T	HET
SBS	Chr3	21553602	C-T	Homo
SBS	Chr3	4321040	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g08420
SBS	Chr4	11132774	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g19970
SBS	Chr4	17445823	C-A	HET
SBS	Chr4	18707798	T-C	HET
SBS	Chr5	12111404	C-A	Homo
SBS	Chr5	29385537	C-T	HET
SBS	Chr6	10757773	C-T	HET
SBS	Chr7	19492511	A-T	HET
SBS	Chr7	22359825	C-T	Homo
SBS	Chr7	2696791	T-C	HET
SBS	Chr8	13207435	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g22006
SBS	Chr8	13768541	A-T	Homo
SBS	Chr8	16891724	G-A	Homo
SBS	Chr8	18666551	T-G	Homo
SBS	Chr8	8872746	G-A	Homo
SBS	Chr9	17234852	T-A	HET
SBS	Chr9	17747201	T-C	HET

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1068927	1068949	22	LOC_Os08g02580
Deletion	Chr3	3731271	3731274	3
Deletion	Chr1	3816904	3816911	7
Deletion	Chr1	5781623	5781628	5
Deletion	Chr1	6245840	6245848	8
Deletion	Chr5	6421252	6421253	1
Deletion	Chr2	7868391	7868401	10
Deletion	Chr7	8525230	8525241	11
Deletion	Chr4	10847695	10847700	5	LOC_Os04g19480
Deletion	Chr5	11272001	11296000	23999	4
Deletion	Chr8	13159916	13159917	1
Deletion	Chr11	13795422	13795427	5
Deletion	Chr1	14175190	14175209	19
Deletion	Chr6	14238020	14238021	1
Deletion	Chr7	14332596	14332597	1
Deletion	Chr8	16919951	16919981	30	LOC_Os08g27780
Deletion	Chr9	17757140	17757150	10
Deletion	Chr4	18153946	18153949	3
Deletion	Chr9	19524914	19524918	4	LOC_Os09g32740
Deletion	Chr2	20464284	20464285	1
Deletion	Chr2	20658821	20658823	2
Deletion	Chr5	21707001	21903000	195999	28
Deletion	Chr12	22559913	22559917	4
Deletion	Chr4	25188684	25188685	1
Deletion	Chr11	28541463	28541467	4
Deletion	Chr7	28647365	28647393	28

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	21836199	21836200	2
Insertion	Chr11	18057145	18057145	1
Insertion	Chr2	9244220	9244241	22
Insertion	Chr4	27274503	27274506	4
Insertion	Chr4	31050413	31050468	56
Insertion	Chr9	8299252	8299252	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	6031676	6031949
Inversion	Chr9	7002588	7002715	LOC_Os09g12290
Inversion	Chr3	28192299	28288020
Inversion	Chr3	28192306	28288033
Inversion	Chr3	35251872	35252086	LOC_Os03g62230

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	9255453	Chr4	16054504
Translocation	Chr9	11664004	Chr4	29920118
Translocation	Chr9	11664442	Chr4	29920128	LOC_Os09g19500
Translocation	Chr8	15548446	Chr5	21668995	LOC_Os05g37080
Translocation	Chr8	15553474	Chr5	21484762	LOC_Os05g36240
Translocation	Chr11	19204560	Chr3	27375636	LOC_Os03g48140
Translocation	Chr11	19205140	Chr5	11295217
Translocation	Chr5	21903500	Chr3	27375639	2

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