Search Results
| Mutant Information |
|---|
| Mutant Name | FN3732-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3732-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13608286 | T-C | HET | ||
| SBS | Chr1 | 23413846 | G-A | HET | ||
| SBS | Chr1 | 41919482 | A-T | HET | ||
| SBS | Chr1 | 41919485 | C-T | HET | ||
| SBS | Chr3 | 8908236 | T-C | HET | ||
| SBS | Chr3 | 13837010 | A-G | HET | ||
| SBS | Chr3 | 13837016 | C-T | HET | ||
| SBS | Chr3 | 27883174 | C-T | HET | ||
| SBS | Chr3 | 32914579 | C-G | HET | ||
| SBS | Chr3 | 33721355 | A-G | HET | ||
| SBS | Chr3 | 34931826 | G-A | HET | ||
| SBS | Chr3 | 36096922 | C-T | HET | ||
| SBS | Chr4 | 8183854 | G-A | HET | ||
| SBS | Chr4 | 13193701 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23200 |
| SBS | Chr4 | 13580507 | A-G | HET | ||
| SBS | Chr4 | 24339284 | A-G | HET | ||
| SBS | Chr4 | 25834511 | T-C | HET | ||
| SBS | Chr5 | 3613015 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g06900 |
| SBS | Chr5 | 21477492 | G-T | Homo | ||
| SBS | Chr5 | 22241967 | C-T | Homo | ||
| SBS | Chr6 | 22719 | G-A | HET | ||
| SBS | Chr7 | 348171 | T-C | Homo | ||
| SBS | Chr7 | 7756001 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13540 |
| SBS | Chr7 | 11443209 | C-T | HET | ||
| SBS | Chr8 | 7682672 | C-T | HET | ||
| SBS | Chr9 | 4237917 | C-T | HET | ||
| SBS | Chr9 | 12209169 | G-T | HET | ||
| SBS | Chr10 | 11453451 | A-G | HET | ||
| SBS | Chr11 | 8407239 | A-G | Homo | ||
| SBS | Chr11 | 21555547 | T-A | Homo | ||
| SBS | Chr11 | 21555556 | G-A | Homo | ||
| SBS | Chr12 | 18892097 | T-C | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 873444 | 873454 | 10 | |
| Deletion | Chr5 | 1759911 | 1759922 | 11 | |
| Deletion | Chr10 | 14212617 | 14212626 | 9 | |
| Deletion | Chr12 | 21481684 | 21481686 | 2 | |
| Deletion | Chr8 | 22075001 | 22159000 | 83999 | 12 |
| Deletion | Chr9 | 22729586 | 22729587 | 1 | |
| Deletion | Chr11 | 25390535 | 25390539 | 4 | |
| Deletion | Chr8 | 26672356 | 26672357 | 1 | |
| Deletion | Chr7 | 28287695 | 28287696 | 1 | |
| Deletion | Chr2 | 29431962 | 29431963 | 1 | LOC_Os02g48080 |
| Deletion | Chr2 | 32207793 | 32207795 | 2 | |
| Deletion | Chr1 | 34895541 | 34895549 | 8 |
No Insertion
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 10525873 | 10526316 | |
| Inversion | Chr8 | 10525875 | 10526318 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 687595 | Chr7 | 11905023 | |
| Translocation | Chr6 | 6822643 | Chr4 | 27350914 | |
| Translocation | Chr8 | 7852450 | Chr2 | 20073700 | |
| Translocation | Chr9 | 10748399 | Chr3 | 13192574 | |
| Translocation | Chr2 | 15019241 | Chr1 | 28392003 | |
| Translocation | Chr2 | 15019245 | Chr1 | 28392867 |