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| Mutant Information |
|---|
| Mutant Name | FN3733-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3733-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16991588 | G-A | HET | ||
| SBS | Chr1 | 20329537 | C-T | HET | ||
| SBS | Chr1 | 2928585 | T-A | Homo | ||
| SBS | Chr1 | 30272059 | A-C | Homo | ||
| SBS | Chr1 | 5435992 | A-C | Homo | ||
| SBS | Chr10 | 12228713 | G-A | HET | ||
| SBS | Chr12 | 21438780 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35280 |
| SBS | Chr2 | 18367274 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g30800 |
| SBS | Chr3 | 11629731 | T-G | Homo | ||
| SBS | Chr3 | 19551771 | G-A | HET | ||
| SBS | Chr3 | 35243009 | C-T | Homo | ||
| SBS | Chr3 | 5972771 | C-T | Homo | ||
| SBS | Chr5 | 15939986 | G-A | HET | ||
| SBS | Chr5 | 21089268 | T-G | HET | ||
| SBS | Chr5 | 6416824 | G-A | HET | ||
| SBS | Chr6 | 16451928 | C-T | HET | ||
| SBS | Chr6 | 28323302 | A-T | HET | ||
| SBS | Chr6 | 28916963 | G-A | HET | ||
| SBS | Chr6 | 448122 | C-T | Homo | ||
| SBS | Chr7 | 18628135 | A-T | HET | ||
| SBS | Chr7 | 23136661 | C-T | HET | STOP_GAINED | LOC_Os07g38500 |
| SBS | Chr8 | 12822436 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g21520 |
| SBS | Chr8 | 13519691 | A-G | HET | ||
| SBS | Chr8 | 17163211 | A-C | HET | ||
| SBS | Chr9 | 17959141 | C-T | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 2217806 | 2217822 | 16 | |
| Deletion | Chr8 | 6644323 | 6644324 | 1 | LOC_Os08g11300 |
| Deletion | Chr10 | 12769146 | 12769147 | 1 | LOC_Os10g24820 |
| Deletion | Chr10 | 13896931 | 13896932 | 1 | LOC_Os10g26630 |
| Deletion | Chr7 | 15848920 | 15848923 | 3 | |
| Deletion | Chr9 | 16147479 | 16147487 | 8 | |
| Deletion | Chr2 | 16389128 | 16389134 | 6 | |
| Deletion | Chr4 | 16925000 | 16925004 | 4 | LOC_Os04g28590 |
| Deletion | Chr7 | 18991620 | 18991621 | 1 | |
| Deletion | Chr4 | 20775929 | 20775930 | 1 | |
| Deletion | Chr11 | 21113660 | 21113666 | 6 | |
| Deletion | Chr4 | 21322617 | 21322622 | 5 | |
| Deletion | Chr3 | 23038759 | 23038761 | 2 | |
| Deletion | Chr5 | 25629724 | 25629725 | 1 | |
| Deletion | Chr1 | 30507344 | 30507350 | 6 | |
| Deletion | Chr4 | 35151116 | 35151150 | 34 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 6396895 | 6466965 | LOC_Os09g11580 |
| Inversion | Chr9 | 6396896 | 6466964 | LOC_Os09g11580 |
| Inversion | Chr7 | 13342372 | 13499529 | LOC_Os07g23880 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 10998393 | Chr1 | 4387669 | 2 |
| Translocation | Chr8 | 10998402 | Chr7 | 13342382 | LOC_Os08g17930 |
| Translocation | Chr8 | 10999373 | Chr7 | 15195582 | 2 |
| Translocation | Chr8 | 11049873 | Chr2 | 33015485 | LOC_Os08g18000 |
| Translocation | Chr8 | 11167936 | Chr6 | 27499775 | LOC_Os08g18220 |
| Translocation | Chr3 | 11234410 | Chr2 | 30009792 | |
| Translocation | Chr3 | 11234827 | Chr2 | 30009801 | |
| Translocation | Chr8 | 11374991 | Chr6 | 27503167 | |
| Translocation | Chr11 | 28348539 | Chr1 | 23458537 | |
| Translocation | Chr4 | 34724673 | Chr3 | 11903396 | 2 |
| Translocation | Chr4 | 34724691 | Chr3 | 11897461 | 2 |