Search Results
| Mutant Information |
|---|
| Mutant Name | FN3743-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3743-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 3395083 | G-A | HET | ||
| SBS | Chr1 | 5784022 | G-C | HET | ||
| SBS | Chr1 | 8404549 | C-G | HET | ||
| SBS | Chr1 | 35076470 | C-T | HET | ||
| SBS | Chr1 | 41996277 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g72400 |
| SBS | Chr2 | 484802 | A-G | Homo | ||
| SBS | Chr2 | 33393766 | G-C | Homo | ||
| SBS | Chr3 | 4674008 | A-G | HET | ||
| SBS | Chr3 | 29259999 | T-A | HET | ||
| SBS | Chr3 | 29260004 | G-A | HET | ||
| SBS | Chr5 | 1166697 | C-G | Homo | ||
| SBS | Chr5 | 9045902 | C-T | HET | ||
| SBS | Chr5 | 22124592 | A-C | Homo | ||
| SBS | Chr6 | 1499479 | C-T | HET | ||
| SBS | Chr6 | 1697694 | T-A | HET | ||
| SBS | Chr6 | 1697695 | T-A | HET | ||
| SBS | Chr6 | 2817480 | C-T | Homo | ||
| SBS | Chr7 | 17799678 | A-T | HET | ||
| SBS | Chr9 | 15376580 | T-C | Homo | ||
| SBS | Chr10 | 7982868 | C-T | HET | ||
| SBS | Chr10 | 8077406 | T-C | Homo | ||
| SBS | Chr10 | 9592234 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g18840 |
| SBS | Chr10 | 18124939 | C-T | Homo | ||
| SBS | Chr10 | 22213519 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g41330 |
| SBS | Chr11 | 7415902 | C-T | HET | ||
| SBS | Chr11 | 8734535 | G-A | HET | ||
| SBS | Chr11 | 11141855 | G-T | Homo | ||
| SBS | Chr11 | 20908367 | G-T | Homo | ||
| SBS | Chr12 | 1720970 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g04110 |
| SBS | Chr12 | 8369174 | T-C | HET | ||
| SBS | Chr12 | 11299547 | G-A | HET | ||
| SBS | Chr12 | 21944672 | G-A | Homo | ||
| SBS | Chr12 | 21944673 | A-T | Homo | ||
| SBS | Chr12 | 23775060 | G-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1501785 | 1501795 | 10 | |
| Deletion | Chr6 | 4622341 | 4622345 | 4 | |
| Deletion | Chr12 | 5479001 | 5516000 | 36999 | 7 |
| Deletion | Chr3 | 7347743 | 7347744 | 1 | LOC_Os03g13590 |
| Deletion | Chr3 | 8203511 | 8203512 | 1 | |
| Deletion | Chr11 | 9524459 | 9524462 | 3 | LOC_Os11g17150 |
| Deletion | Chr4 | 13583861 | 13583886 | 25 | |
| Deletion | Chr8 | 14165127 | 14165137 | 10 | |
| Deletion | Chr12 | 19214303 | 19214310 | 7 | |
| Deletion | Chr11 | 22448465 | 22448475 | 10 | |
| Deletion | Chr12 | 23924680 | 23924682 | 2 | |
| Deletion | Chr2 | 29552001 | 29591000 | 38999 | 4 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 31127909 | 31127910 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 8064392 | 8432937 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 8422958 | Chr10 | 19062652 | |
| Translocation | Chr12 | 25316554 | Chr8 | 27811409 | LOC_Os08g44180 |
| Translocation | Chr12 | 25317046 | Chr8 | 27811438 | LOC_Os08g44180 |
| Translocation | Chr12 | 25317064 | Chr1 | 10273418 | |
| Translocation | Chr12 | 25323357 | Chr1 | 10273411 |