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| Mutant Information |
|---|
| Mutant Name | FN3751-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3751-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18491031 | C-G | Homo | ||
| SBS | Chr1 | 8715728 | T-C | HET | ||
| SBS | Chr10 | 10618123 | A-G | HET | ||
| SBS | Chr10 | 5823068 | C-A | HET | ||
| SBS | Chr10 | 5996733 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g10830 |
| SBS | Chr11 | 16284722 | C-T | Homo | ||
| SBS | Chr11 | 18121208 | C-T | Homo | ||
| SBS | Chr11 | 25755851 | A-T | Homo | ||
| SBS | Chr11 | 6373608 | C-T | HET | ||
| SBS | Chr11 | 8871273 | T-C | HET | ||
| SBS | Chr2 | 17517994 | T-G | HET | ||
| SBS | Chr2 | 33867882 | A-T | Homo | ||
| SBS | Chr2 | 4059269 | T-C | HET | ||
| SBS | Chr2 | 6577016 | G-T | HET | ||
| SBS | Chr2 | 6757748 | A-G | HET | ||
| SBS | Chr3 | 21314829 | C-T | HET | ||
| SBS | Chr3 | 5024961 | G-A | Homo | ||
| SBS | Chr6 | 15519055 | G-A | HET | ||
| SBS | Chr6 | 16386347 | G-C | Homo | ||
| SBS | Chr6 | 8625856 | C-T | Homo | ||
| SBS | Chr7 | 11831024 | C-T | Homo | ||
| SBS | Chr8 | 1144383 | A-G | Homo | ||
| SBS | Chr8 | 14713379 | A-T | Homo | ||
| SBS | Chr8 | 15170065 | G-A | HET | ||
| SBS | Chr9 | 22687106 | C-T | HET | ||
| SBS | Chr9 | 22687108 | T-C | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 1819920 | 1819922 | 2 | |
| Deletion | Chr7 | 3209001 | 3216000 | 6999 | LOC_Os07g06610 |
| Deletion | Chr1 | 4345061 | 4345067 | 6 | |
| Deletion | Chr4 | 8584491 | 8584517 | 26 | |
| Deletion | Chr7 | 11798568 | 11798569 | 1 | LOC_Os07g20430 |
| Deletion | Chr5 | 16694978 | 16694980 | 2 | |
| Deletion | Chr12 | 17524861 | 17524863 | 2 | |
| Deletion | Chr7 | 19520267 | 19520290 | 23 | LOC_Os07g32690 |
| Deletion | Chr8 | 20788245 | 20788249 | 4 | |
| Deletion | Chr2 | 22191428 | 22191432 | 4 | |
| Deletion | Chr6 | 22831962 | 22831963 | 1 | |
| Deletion | Chr2 | 25313385 | 25313386 | 1 | |
| Deletion | Chr6 | 25351001 | 25372000 | 20999 | 3 |
| Deletion | Chr7 | 26029001 | 26043000 | 13999 | 4 |
| Deletion | Chr6 | 27573349 | 27573360 | 11 | |
| Deletion | Chr1 | 27863810 | 27863812 | 2 | |
| Deletion | Chr6 | 29620356 | 29620357 | 1 | |
| Deletion | Chr2 | 33816255 | 33816259 | 4 | |
| Deletion | Chr2 | 34444270 | 34444271 | 1 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 26779432 | 26779433 | 2 | |
| Insertion | Chr5 | 3389577 | 3389578 | 2 | |
| Insertion | Chr6 | 12659108 | 12659111 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 43067512 | 43185429 | LOC_Os01g74330 |
| Inversion | Chr1 | 43067519 | 43185444 | LOC_Os01g74330 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 8943790 | Chr1 | 2012126 | |
| Translocation | Chr7 | 11939025 | Chr1 | 879928 | LOC_Os07g20670 |
| Translocation | Chr8 | 16320861 | Chr5 | 3090326 | LOC_Os08g26840 |
| Translocation | Chr9 | 20287880 | Chr6 | 13312151 | |
| Translocation | Chr8 | 28038027 | Chr1 | 2560342 |