Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3752-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3752-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30122476 | G-A | HET | ||
| SBS | Chr1 | 42971437 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g74180 |
| SBS | Chr10 | 18758153 | C-G | Homo | ||
| SBS | Chr10 | 20356537 | T-A | HET | ||
| SBS | Chr10 | 22785592 | A-T | Homo | ||
| SBS | Chr11 | 8073066 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g14380 |
| SBS | Chr12 | 12709058 | G-A | HET | ||
| SBS | Chr12 | 17055603 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g28850 |
| SBS | Chr12 | 4735648 | A-C | HET | ||
| SBS | Chr2 | 34317354 | T-C | HET | ||
| SBS | Chr2 | 644387 | T-G | Homo | ||
| SBS | Chr3 | 19352257 | G-A | HET | ||
| SBS | Chr3 | 29762043 | T-A | HET | ||
| SBS | Chr5 | 10854234 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g18730 |
| SBS | Chr6 | 17598674 | G-A | Homo | ||
| SBS | Chr6 | 6336469 | G-A | HET | ||
| SBS | Chr7 | 23319474 | G-A | HET | ||
| SBS | Chr7 | 9893784 | G-C | HET | ||
| SBS | Chr8 | 19542789 | G-T | Homo | ||
| SBS | Chr8 | 9709534 | G-A | HET | ||
| SBS | Chr9 | 21612461 | G-A | HET | ||
| SBS | Chr9 | 7837944 | C-T | HET | ||
| SBS | Chr9 | 8440446 | T-G | Homo |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 4149050 | 4149051 | 1 | |
| Deletion | Chr4 | 4532830 | 4532836 | 6 | |
| Deletion | Chr10 | 12010476 | 12010478 | 2 | |
| Deletion | Chr6 | 12457001 | 12506000 | 48999 | 7 |
| Deletion | Chr6 | 12530001 | 12662000 | 131999 | 22 |
| Deletion | Chr4 | 14063248 | 14063255 | 7 | |
| Deletion | Chr6 | 16017256 | 16017262 | 6 | |
| Deletion | Chr4 | 18319358 | 18319363 | 5 | LOC_Os04g30660 |
| Deletion | Chr2 | 21079701 | 21079702 | 1 | |
| Deletion | Chr2 | 21570001 | 21618000 | 47999 | 7 |
| Deletion | Chr8 | 23347001 | 23370000 | 22999 | 3 |
| Deletion | Chr2 | 23994582 | 23994583 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 41615973 | 41615973 | 1 | |
| Insertion | Chr4 | 9331355 | 9331359 | 5 | |
| Insertion | Chr7 | 19142200 | 19142201 | 2 | LOC_Os07g32220 |
| Insertion | Chr8 | 6448074 | 6448074 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1520653 | 1538483 | |
| Inversion | Chr12 | 19201193 | 19632655 | LOC_Os12g31880 |
| Inversion | Chr6 | 19918388 | 20251666 | LOC_Os06g34830 |
| Inversion | Chr6 | 19919832 | 20242807 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3761399 | Chr2 | 17525907 | LOC_Os10g07160 |
| Translocation | Chr7 | 7493997 | Chr3 | 31385037 | 2 |
| Translocation | Chr10 | 12580401 | Chr8 | 14922478 | |
| Translocation | Chr8 | 16385249 | Chr7 | 15520167 | |
| Translocation | Chr6 | 20565754 | Chr3 | 23167128 | LOC_Os03g41700 |
| Translocation | Chr8 | 25847438 | Chr2 | 21573077 | 2 |
| Translocation | Chr8 | 25847444 | Chr2 | 21570874 | 2 |
| Translocation | Chr11 | 28348540 | Chr1 | 23458413 | |
| Translocation | Chr6 | 28538078 | Chr2 | 30506741 |