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| Mutant Information |
|---|
| Mutant Name | FN3753-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3753-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20641745 | A-C | HET | ||
| SBS | Chr10 | 18081089 | G-A | Homo | ||
| SBS | Chr10 | 20635936 | T-C | HET | ||
| SBS | Chr10 | 7890817 | G-A | HET | ||
| SBS | Chr11 | 15751770 | A-G | Homo | ||
| SBS | Chr11 | 4374307 | C-G | HET | ||
| SBS | Chr2 | 20931742 | T-A | HET | ||
| SBS | Chr2 | 7712195 | G-A | HET | ||
| SBS | Chr3 | 21553602 | C-T | Homo | ||
| SBS | Chr4 | 1507346 | C-T | HET | ||
| SBS | Chr4 | 23984560 | C-G | HET | ||
| SBS | Chr4 | 31472391 | A-G | HET | ||
| SBS | Chr5 | 25189657 | T-A | Homo | ||
| SBS | Chr6 | 30044679 | G-A | Homo | ||
| SBS | Chr6 | 4003030 | G-A | HET | ||
| SBS | Chr7 | 13017486 | G-A | HET | ||
| SBS | Chr7 | 16033997 | C-A | HET | ||
| SBS | Chr7 | 8209721 | C-G | HET | ||
| SBS | Chr8 | 7136700 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g12120 |
| SBS | Chr9 | 13338398 | C-T | HET | STOP_GAINED | LOC_Os09g22020 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 423258 | 423262 | 4 | |
| Deletion | Chr2 | 1660892 | 1660900 | 8 | |
| Deletion | Chr7 | 5301251 | 5301270 | 19 | |
| Deletion | Chr12 | 5777970 | 5777971 | 1 | |
| Deletion | Chr8 | 7819001 | 7868000 | 48999 | 8 |
| Deletion | Chr8 | 8206001 | 8335000 | 128999 | 18 |
| Deletion | Chr11 | 9902715 | 9902717 | 2 | |
| Deletion | Chr12 | 11336072 | 11336082 | 10 | |
| Deletion | Chr8 | 12194405 | 12194411 | 6 | |
| Deletion | Chr2 | 13014578 | 13014580 | 2 | |
| Deletion | Chr6 | 13281659 | 13281663 | 4 | |
| Deletion | Chr5 | 13845075 | 13845085 | 10 | |
| Deletion | Chr5 | 16016005 | 16016006 | 1 | |
| Deletion | Chr3 | 19607052 | 19607055 | 3 | |
| Deletion | Chr3 | 21579146 | 21579158 | 12 | LOC_Os03g38850 |
| Deletion | Chr7 | 23980488 | 23980492 | 4 | |
| Deletion | Chr6 | 26735519 | 26735520 | 1 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 12951525 | 12972379 | LOC_Os08g21695 |
| Inversion | Chr2 | 16548417 | 17083401 | LOC_Os02g28860 |
| Inversion | Chr2 | 17807551 | 18495154 | LOC_Os02g29960 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 2254530 | Chr11 | 22656624 | |
| Translocation | Chr12 | 4463686 | Chr4 | 24316834 | LOC_Os04g40970 |
| Translocation | Chr12 | 4463701 | Chr4 | 24317457 | LOC_Os04g40970 |
| Translocation | Chr11 | 27569115 | Chr5 | 16490291 | |
| Translocation | Chr11 | 28896788 | Chr3 | 31942147 | LOC_Os11g47910 |
| Translocation | Chr3 | 30923708 | Chr1 | 22550939 |