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| Mutant Information |
|---|
| Mutant Name | FN3757-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3757-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11668675 | C-T | HET | ||
| SBS | Chr1 | 19855258 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g35860 |
| SBS | Chr1 | 31771745 | G-T | HET | ||
| SBS | Chr10 | 3208613 | G-C | Homo | ||
| SBS | Chr11 | 10862195 | A-T | HET | ||
| SBS | Chr11 | 13967008 | C-T | HET | ||
| SBS | Chr11 | 15757482 | G-A | HET | ||
| SBS | Chr11 | 19930177 | C-A | HET | ||
| SBS | Chr11 | 8801384 | C-T | HET | ||
| SBS | Chr2 | 10875 | T-A | HET | ||
| SBS | Chr2 | 21943161 | G-T | HET | ||
| SBS | Chr2 | 33024481 | T-C | HET | ||
| SBS | Chr2 | 8758003 | C-A | Homo | ||
| SBS | Chr3 | 19613857 | G-A | HET | ||
| SBS | Chr3 | 21639217 | T-C | Homo | ||
| SBS | Chr3 | 4642220 | C-T | HET | ||
| SBS | Chr3 | 883066 | T-C | HET | ||
| SBS | Chr4 | 13336739 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23350 |
| SBS | Chr4 | 30287438 | T-C | HET | ||
| SBS | Chr4 | 3320619 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06360 |
| SBS | Chr4 | 35259387 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g59290 |
| SBS | Chr5 | 21787163 | A-G | HET | ||
| SBS | Chr5 | 29032461 | T-C | HET | ||
| SBS | Chr5 | 29599917 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g51620 |
| SBS | Chr6 | 11343152 | A-T | HET | ||
| SBS | Chr6 | 11343153 | A-T | HET | ||
| SBS | Chr6 | 13503652 | C-G | HET | ||
| SBS | Chr6 | 16454191 | T-A | HET | ||
| SBS | Chr6 | 22397795 | G-A | HET | ||
| SBS | Chr7 | 14946625 | T-C | HET | ||
| SBS | Chr7 | 23700268 | T-A | HET | ||
| SBS | Chr8 | 10822509 | C-A | Homo | ||
| SBS | Chr8 | 10831937 | C-T | Homo | ||
| SBS | Chr8 | 12116742 | G-A | Homo | ||
| SBS | Chr8 | 15932056 | C-T | HET | ||
| SBS | Chr8 | 25890463 | C-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2215589 | 2215592 | 3 | |
| Deletion | Chr3 | 5583063 | 5583069 | 6 | |
| Deletion | Chr8 | 10632515 | 10632516 | 1 | LOC_Os08g17390 |
| Deletion | Chr8 | 11377546 | 11377574 | 28 | |
| Deletion | Chr6 | 11407240 | 11407254 | 14 | |
| Deletion | Chr1 | 12368229 | 12368230 | 1 | |
| Deletion | Chr1 | 12917091 | 12917092 | 1 | |
| Deletion | Chr7 | 13317001 | 13384000 | 66999 | 15 |
| Deletion | Chr1 | 17147592 | 17147594 | 2 | |
| Deletion | Chr8 | 17384027 | 17384032 | 5 | |
| Deletion | Chr9 | 18151001 | 18178000 | 26999 | 6 |
| Deletion | Chr3 | 20818612 | 20818613 | 1 | |
| Deletion | Chr3 | 22010784 | 22010792 | 8 | |
| Deletion | Chr5 | 26276532 | 26276536 | 4 |
No Insertion
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 26551056 | 26558923 | LOC_Os06g44034 |
| Inversion | Chr6 | 26551062 | 26558964 | LOC_Os06g44034 |
| Inversion | Chr5 | 26892536 | 27555636 | LOC_Os05g48060 |
| Inversion | Chr5 | 26892538 | 27555640 | LOC_Os05g48060 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 4251662 | Chr2 | 19064399 | LOC_Os05g07870 |
| Translocation | Chr8 | 13640912 | Chr7 | 13573677 | 2 |