Search Results
| Mutant Information |
|---|
| Mutant Name | FN3760-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3760-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6427494 | T-A | Homo | ||
| SBS | Chr1 | 15665350 | G-A | HET | ||
| SBS | Chr1 | 18519552 | G-C | Homo | ||
| SBS | Chr1 | 20142763 | C-T | HET | ||
| SBS | Chr1 | 36067551 | G-A | HET | ||
| SBS | Chr2 | 2735536 | A-T | HET | ||
| SBS | Chr2 | 2735910 | T-G | HET | ||
| SBS | Chr2 | 7810234 | G-A | HET | ||
| SBS | Chr3 | 3319012 | G-A | Homo | ||
| SBS | Chr3 | 21262566 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g38310 |
| SBS | Chr3 | 24012629 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g43040 |
| SBS | Chr4 | 1007487 | T-A | HET | ||
| SBS | Chr4 | 3157917 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g06080 |
| SBS | Chr4 | 9215283 | G-C | HET | ||
| SBS | Chr4 | 18102285 | A-T | HET | ||
| SBS | Chr5 | 13929637 | C-A | HET | ||
| SBS | Chr5 | 27084316 | G-A | Homo | ||
| SBS | Chr7 | 4554318 | C-A | HET | ||
| SBS | Chr7 | 23461013 | G-A | HET | ||
| SBS | Chr7 | 27081899 | C-A | Homo | ||
| SBS | Chr8 | 19482303 | G-T | HET | ||
| SBS | Chr10 | 2952541 | A-T | HET | ||
| SBS | Chr10 | 14246678 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g27040 |
| SBS | Chr10 | 22314662 | C-T | HET | ||
| SBS | Chr11 | 11679980 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g20220 |
| SBS | Chr12 | 5269385 | G-A | HET | ||
| SBS | Chr12 | 8956984 | C-A | HET | ||
| SBS | Chr12 | 15661550 | A-G | HET | ||
| SBS | Chr12 | 25179719 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g40670 |
| SBS | Chr12 | 26514748 | A-T | HET | ||
| SBS | Chr12 | 26514749 | A-T | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 753905 | 753907 | 2 | |
| Deletion | Chr2 | 3347283 | 3347296 | 13 | |
| Deletion | Chr12 | 13515578 | 13515581 | 3 | |
| Deletion | Chr2 | 14641628 | 14641647 | 19 | LOC_Os02g25170 |
| Deletion | Chr6 | 16478734 | 16478735 | 1 | |
| Deletion | Chr12 | 17670805 | 17670806 | 1 | |
| Deletion | Chr11 | 19276022 | 19276028 | 6 | |
| Deletion | Chr10 | 21366107 | 21366110 | 3 | |
| Deletion | Chr1 | 24042088 | 24042089 | 1 | |
| Deletion | Chr8 | 24454833 | 24454835 | 2 | |
| Deletion | Chr5 | 26616011 | 26616030 | 19 | |
| Deletion | Chr11 | 27075001 | 27125000 | 49999 | 8 |
| Deletion | Chr11 | 27131001 | 27263000 | 131999 | 22 |
| Deletion | Chr11 | 27283001 | 27310000 | 26999 | 4 |
| Deletion | Chr11 | 27352001 | 27369000 | 16999 | 4 |
| Deletion | Chr3 | 35943742 | 35943743 | 1 | |
| Deletion | Chr1 | 36281065 | 36281074 | 9 | LOC_Os01g62650 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 22241881 | 22241883 | 3 | |
| Insertion | Chr10 | 13117777 | 13117780 | 4 | |
| Insertion | Chr10 | 895170 | 895171 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 20587724 | 20587874 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4365678 | Chr2 | 30232419 | LOC_Os02g49470 |
| Translocation | Chr12 | 5479289 | Chr6 | 5623439 | LOC_Os06g10770 |
| Translocation | Chr12 | 5504001 | Chr2 | 14013816 | 2 |
| Translocation | Chr6 | 5623425 | Chr2 | 14013374 | 2 |
| Translocation | Chr11 | 7078606 | Chr7 | 17406960 | 2 |
| Translocation | Chr6 | 21598611 | Chr4 | 14063218 | LOC_Os06g36700 |
| Translocation | Chr6 | 21598624 | Chr4 | 14062603 | LOC_Os06g36700 |