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| Mutant Information |
|---|
| Mutant Name | FN3761-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3761-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10048194 | T-G | HET | ||
| SBS | Chr1 | 13727742 | G-A | HET | ||
| SBS | Chr1 | 22272638 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g39520 |
| SBS | Chr1 | 42825433 | G-T | Homo | ||
| SBS | Chr10 | 11852717 | C-T | Homo | ||
| SBS | Chr11 | 22624258 | C-T | HET | ||
| SBS | Chr11 | 23196980 | A-G | HET | ||
| SBS | Chr12 | 14882458 | C-A | HET | ||
| SBS | Chr2 | 11932039 | T-C | HET | ||
| SBS | Chr2 | 13077285 | C-T | HET | ||
| SBS | Chr2 | 17603972 | G-A | HET | ||
| SBS | Chr2 | 23008801 | A-G | Homo | ||
| SBS | Chr2 | 6519503 | G-A | Homo | ||
| SBS | Chr3 | 10742351 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g19160 |
| SBS | Chr3 | 17660320 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g31000 |
| SBS | Chr3 | 7444389 | T-A | Homo | ||
| SBS | Chr4 | 21655063 | A-C | Homo | ||
| SBS | Chr5 | 11010803 | A-G | HET | ||
| SBS | Chr5 | 22222330 | A-T | HET | ||
| SBS | Chr5 | 29601596 | C-T | HET | ||
| SBS | Chr5 | 29676946 | A-T | HET | ||
| SBS | Chr6 | 22486304 | A-T | Homo | ||
| SBS | Chr6 | 28332188 | C-G | HET | ||
| SBS | Chr6 | 8333735 | G-A | HET | ||
| SBS | Chr7 | 16365985 | G-A | HET | ||
| SBS | Chr8 | 6533506 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g11110 |
| SBS | Chr9 | 15907159 | A-G | HET | ||
| SBS | Chr9 | 1618274 | G-A | HET | ||
| SBS | Chr9 | 16982365 | T-C | HET | ||
| SBS | Chr9 | 19286134 | T-A | HET | ||
| SBS | Chr9 | 3430039 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07070 |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 6439505 | 6439517 | 12 | |
| Deletion | Chr3 | 7110545 | 7110548 | 3 | |
| Deletion | Chr12 | 12884301 | 12884303 | 2 | |
| Deletion | Chr4 | 21665954 | 21665959 | 5 | |
| Deletion | Chr1 | 26144378 | 26144381 | 3 | LOC_Os01g46000 |
| Deletion | Chr4 | 28608173 | 28608174 | 1 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 30195149 | 30195152 | 4 | |
| Insertion | Chr6 | 3027504 | 3027504 | 1 | |
| Insertion | Chr7 | 22554021 | 22554024 | 4 | |
| Insertion | Chr8 | 18424274 | 18424367 | 94 | LOC_Os08g29990 |
| Insertion | Chr9 | 7153260 | 7153260 | 1 |
No Inversion
Translocations: 10
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 9371436 | Chr7 | 4204682 | |
| Translocation | Chr8 | 10395237 | Chr1 | 31269133 | |
| Translocation | Chr10 | 12860090 | Chr2 | 16818187 | LOC_Os10g24980 |
| Translocation | Chr2 | 14983935 | Chr1 | 20917542 | |
| Translocation | Chr11 | 16760293 | Chr1 | 5706421 | LOC_Os01g10680 |
| Translocation | Chr11 | 17023594 | Chr3 | 32701913 | LOC_Os03g57330 |
| Translocation | Chr11 | 17309597 | Chr3 | 32701906 | LOC_Os03g57330 |
| Translocation | Chr12 | 22302776 | Chr2 | 9161652 | |
| Translocation | Chr12 | 24881475 | Chr5 | 14733837 | LOC_Os05g25370 |
| Translocation | Chr12 | 24881478 | Chr5 | 12422329 | LOC_Os05g21120 |