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| Mutant Information |
|---|
| Mutant Name | FN3762-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3762-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17646226 | C-T | HET | ||
| SBS | Chr10 | 4709701 | C-G | Homo | ||
| SBS | Chr11 | 11642319 | G-A | Homo | STOP_GAINED | LOC_Os11g20150 |
| SBS | Chr12 | 14284542 | C-A | HET | ||
| SBS | Chr12 | 16326200 | T-A | Homo | ||
| SBS | Chr12 | 20325124 | A-T | HET | ||
| SBS | Chr12 | 26822941 | T-G | Homo | ||
| SBS | Chr12 | 2983152 | T-C | HET | ||
| SBS | Chr2 | 34170319 | A-G | HET | ||
| SBS | Chr3 | 1738914 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g03860 |
| SBS | Chr3 | 23123639 | G-A | Homo | ||
| SBS | Chr3 | 28043010 | G-A | Homo | ||
| SBS | Chr3 | 29581713 | C-A | HET | ||
| SBS | Chr3 | 31182011 | C-G | HET | ||
| SBS | Chr3 | 31182013 | A-G | HET | ||
| SBS | Chr3 | 31806354 | G-A | HET | ||
| SBS | Chr4 | 18784565 | G-A | HET | ||
| SBS | Chr5 | 3604309 | C-G | Homo | ||
| SBS | Chr5 | 5496915 | A-T | HET | ||
| SBS | Chr6 | 11875452 | C-T | HET | ||
| SBS | Chr6 | 12013664 | G-C | HET | ||
| SBS | Chr7 | 8618279 | C-T | HET | ||
| SBS | Chr8 | 12324413 | C-T | Homo | ||
| SBS | Chr8 | 13422733 | A-G | HET | ||
| SBS | Chr8 | 15084023 | T-C | Homo | ||
| SBS | Chr8 | 28188082 | C-T | HET | ||
| SBS | Chr9 | 13686570 | T-A | HET | ||
| SBS | Chr9 | 1974111 | T-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 4001662 | 4001676 | 14 | |
| Deletion | Chr10 | 5090476 | 5090482 | 6 | LOC_Os10g09440 |
| Deletion | Chr3 | 6404127 | 6404134 | 7 | LOC_Os03g12210 |
| Deletion | Chr5 | 7542337 | 7542345 | 8 | |
| Deletion | Chr11 | 13302940 | 13302950 | 10 | LOC_Os11g23110 |
| Deletion | Chr3 | 17143756 | 17143757 | 1 | LOC_Os03g30060 |
| Deletion | Chr4 | 19457745 | 19457748 | 3 | |
| Deletion | Chr5 | 21671848 | 21671850 | 2 | |
| Deletion | Chr1 | 33171245 | 33171250 | 5 | |
| Deletion | Chr1 | 34619173 | 34619178 | 5 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 26757684 | 26757689 | 6 | LOC_Os12g43090 |
| Insertion | Chr4 | 3865689 | 3865694 | 6 | |
| Insertion | Chr4 | 7914316 | 7914325 | 10 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 21821809 | 21903964 | LOC_Os01g38890 |
| Inversion | Chr1 | 24354873 | 24505211 | LOC_Os01g42800 |
| Inversion | Chr1 | 24354902 | 24505216 | LOC_Os01g42800 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 7323829 | Chr6 | 14828915 | LOC_Os06g25320 |
| Translocation | Chr12 | 9228988 | Chr4 | 7080256 | |
| Translocation | Chr12 | 18655782 | Chr5 | 5645967 | 2 |
| Translocation | Chr11 | 19199011 | Chr8 | 15172260 | LOC_Os11g32530 |
| Translocation | Chr8 | 20226498 | Chr5 | 3099212 | LOC_Os08g32660 |
| Translocation | Chr4 | 34504425 | Chr1 | 1540828 | |
| Translocation | Chr4 | 34504427 | Chr1 | 1521941 |