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| Mutant Information |
|---|
| Mutant Name | FN3763-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3763-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37216821 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g64070 |
| SBS | Chr1 | 43095878 | C-T | HET | ||
| SBS | Chr1 | 5363254 | A-T | HET | ||
| SBS | Chr1 | 7344769 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13170 |
| SBS | Chr10 | 18376949 | A-T | HET | ||
| SBS | Chr10 | 23146074 | T-C | HET | ||
| SBS | Chr11 | 10572469 | C-T | Homo | STOP_GAINED | LOC_Os11g18680 |
| SBS | Chr12 | 18062086 | G-A | HET | ||
| SBS | Chr2 | 19296090 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g32570 |
| SBS | Chr2 | 27477482 | C-T | Homo | ||
| SBS | Chr2 | 6943324 | G-A | HET | ||
| SBS | Chr3 | 10202557 | C-T | HET | ||
| SBS | Chr3 | 16207434 | C-T | HET | ||
| SBS | Chr3 | 29716889 | T-A | HET | ||
| SBS | Chr4 | 30562842 | G-A | Homo | ||
| SBS | Chr5 | 14273795 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g24670 |
| SBS | Chr5 | 18167794 | C-T | HET | ||
| SBS | Chr5 | 21814162 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g37280 |
| SBS | Chr5 | 22805146 | A-T | HET | ||
| SBS | Chr5 | 22805150 | T-C | HET | ||
| SBS | Chr5 | 22805154 | G-A | HET | ||
| SBS | Chr5 | 23344569 | C-T | HET | ||
| SBS | Chr6 | 27584850 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g45560 |
| SBS | Chr7 | 19690467 | T-G | HET | ||
| SBS | Chr7 | 23271455 | G-A | HET | ||
| SBS | Chr8 | 20575934 | A-T | Homo | ||
| SBS | Chr8 | 20575935 | A-T | Homo | ||
| SBS | Chr8 | 26891164 | A-G | HET | ||
| SBS | Chr9 | 19127812 | C-A | HET | ||
| SBS | Chr9 | 4036086 | T-A | Homo |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 5972700 | 5972709 | 9 | |
| Deletion | Chr7 | 7897315 | 7897321 | 6 | |
| Deletion | Chr1 | 8365250 | 8365254 | 4 | LOC_Os01g14926 |
| Deletion | Chr8 | 15327001 | 15352000 | 24999 | 5 |
| Deletion | Chr3 | 15788200 | 15788201 | 1 | LOC_Os03g27520 |
| Deletion | Chr3 | 16956371 | 16956450 | 79 | |
| Deletion | Chr11 | 19337352 | 19337353 | 1 | |
| Deletion | Chr4 | 21772011 | 21772030 | 19 | |
| Deletion | Chr8 | 23541273 | 23541277 | 4 | |
| Deletion | Chr8 | 23801851 | 23801852 | 1 | |
| Deletion | Chr1 | 24106252 | 24106261 | 9 | |
| Deletion | Chr1 | 25737246 | 25737247 | 1 | |
| Deletion | Chr8 | 26753844 | 26753845 | 1 | LOC_Os08g42390 |
| Deletion | Chr11 | 27105001 | 27208000 | 102999 | 17 |
| Deletion | Chr2 | 28106902 | 28106910 | 8 | LOC_Os02g46110 |
| Deletion | Chr4 | 29500274 | 29500279 | 5 | LOC_Os04g49440 |
| Deletion | Chr1 | 36221842 | 36221850 | 8 |
Insertions: 6
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 4057488 | 4089228 | 2 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 11649637 | Chr8 | 17299192 | LOC_Os08g28350 |
| Translocation | Chr11 | 18033977 | Chr1 | 31269142 | |
| Translocation | Chr11 | 19930909 | Chr8 | 19933685 | |
| Translocation | Chr9 | 21190277 | Chr2 | 28205518 | LOC_Os09g36730 |
| Translocation | Chr9 | 21190283 | Chr2 | 28205767 | LOC_Os09g36730 |
| Translocation | Chr11 | 26952279 | Chr3 | 34241378 | LOC_Os03g60200 |
| Translocation | Chr11 | 28408022 | Chr2 | 13043198 | LOC_Os11g47240 |
| Translocation | Chr11 | 28408253 | Chr4 | 18149507 | LOC_Os11g47240 |