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| Mutant Information |
|---|
| Mutant Name | FN3764-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3764-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21495714 | T-A | Homo | ||
| SBS | Chr1 | 21705380 | C-A | Homo | ||
| SBS | Chr1 | 495109 | A-G | HET | ||
| SBS | Chr11 | 10836572 | T-C | HET | ||
| SBS | Chr11 | 23342892 | A-T | HET | ||
| SBS | Chr11 | 24412690 | T-C | HET | ||
| SBS | Chr11 | 28009636 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g46250 |
| SBS | Chr11 | 9033780 | G-T | HET | ||
| SBS | Chr12 | 10087286 | G-A | HET | ||
| SBS | Chr12 | 17416747 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g29350 |
| SBS | Chr12 | 19196753 | C-G | Homo | ||
| SBS | Chr12 | 3119121 | T-C | Homo | ||
| SBS | Chr12 | 7871430 | G-A | HET | STOP_GAINED | LOC_Os12g13880 |
| SBS | Chr12 | 9581331 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g16720 |
| SBS | Chr2 | 21596172 | C-T | Homo | ||
| SBS | Chr2 | 6447600 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g12380 |
| SBS | Chr4 | 13411567 | T-A | Homo | ||
| SBS | Chr4 | 26703712 | G-T | HET | ||
| SBS | Chr4 | 6713042 | T-C | Homo | ||
| SBS | Chr5 | 10296782 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g17910 |
| SBS | Chr5 | 17119202 | G-A | HET | ||
| SBS | Chr5 | 21331330 | C-T | Homo | ||
| SBS | Chr5 | 21331331 | A-T | Homo | ||
| SBS | Chr5 | 27854484 | C-T | Homo | ||
| SBS | Chr6 | 708850 | C-G | Homo | ||
| SBS | Chr7 | 13785784 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g24240 |
| SBS | Chr7 | 13785785 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g24240 |
| SBS | Chr7 | 2393392 | G-A | Homo | ||
| SBS | Chr7 | 6773884 | G-C | HET | ||
| SBS | Chr7 | 6773885 | A-G | HET | ||
| SBS | Chr8 | 1384915 | C-G | Homo | ||
| SBS | Chr8 | 4434567 | T-A | Homo | ||
| SBS | Chr9 | 16175658 | A-G | HET | ||
| SBS | Chr9 | 17969887 | A-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 971552 | 971555 | 3 | |
| Deletion | Chr9 | 3048283 | 3048285 | 2 | |
| Deletion | Chr9 | 5329434 | 5329437 | 3 | |
| Deletion | Chr6 | 8786025 | 8786034 | 9 | |
| Deletion | Chr12 | 9974593 | 9974596 | 3 | |
| Deletion | Chr8 | 12328428 | 12328431 | 3 | |
| Deletion | Chr3 | 14470429 | 14470430 | 1 | LOC_Os03g25330 |
| Deletion | Chr1 | 15264354 | 15264357 | 3 | |
| Deletion | Chr10 | 21278833 | 21278839 | 6 | |
| Deletion | Chr5 | 25426113 | 25426120 | 7 | LOC_Os05g43740 |
| Deletion | Chr3 | 28343597 | 28343601 | 4 | |
| Deletion | Chr1 | 29068295 | 29068303 | 8 | LOC_Os01g50616 |
| Deletion | Chr1 | 35337794 | 35337796 | 2 | |
| Deletion | Chr3 | 36392347 | 36392364 | 17 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 13639178 | 13639179 | 2 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 10943424 | Chr3 | 1961474 | |
| Translocation | Chr7 | 15132395 | Chr3 | 13647112 | |
| Translocation | Chr12 | 15647896 | Chr10 | 11437864 | |
| Translocation | Chr9 | 16359735 | Chr7 | 8414728 | LOC_Os09g26920 |
| Translocation | Chr9 | 16359950 | Chr7 | 8414724 | LOC_Os09g26920 |
| Translocation | Chr6 | 18908694 | Chr2 | 35862438 | |
| Translocation | Chr10 | 21106534 | Chr4 | 14888754 | LOC_Os10g39510 |