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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21309711	G-A	Homo
SBS	Chr1	3393632	G-A	HET
SBS	Chr1	42021054	G-A	HET
SBS	Chr1	43088136	A-G	HET
SBS	Chr1	6262096	C-T	HET
SBS	Chr10	22366825	G-A	HET
SBS	Chr11	17742266	T-C	Homo
SBS	Chr11	20855233	T-C	HET
SBS	Chr12	21841058	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g35840
SBS	Chr12	24405761	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g39570
SBS	Chr2	16208779	T-C	HET
SBS	Chr2	23707051	T-A	HET
SBS	Chr2	9191909	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16160
SBS	Chr3	2138745	G-A	Homo
SBS	Chr3	3113983	G-A	Homo
SBS	Chr3	7570693	C-A	HET
SBS	Chr3	9202791	A-C	HET
SBS	Chr4	1382635	C-A	HET
SBS	Chr6	9915404	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g17100
SBS	Chr7	17722728	C-T	HET
SBS	Chr7	4174818	T-C	HET
SBS	Chr7	5910604	A-T	Homo
SBS	Chr7	5910605	A-T	Homo
SBS	Chr8	13777220	G-A	Homo
SBS	Chr9	11547028	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19290
SBS	Chr9	13705080	C-T	HET

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	201134	201145	11	LOC_Os05g01310
Deletion	Chr6	2783307	2783323	16
Deletion	Chr6	4442552	4442558	6
Deletion	Chr8	6154527	6154534	7
Deletion	Chr7	7251969	7251972	3	LOC_Os07g12690
Deletion	Chr7	8660341	8660348	7
Deletion	Chr6	12921310	12921319	9
Deletion	Chr9	13304259	13304275	16
Deletion	Chr9	15660219	15660220	1
Deletion	Chr10	16954001	16995000	40999	6
Deletion	Chr8	20806110	20806133	23
Deletion	Chr5	26462099	26462102	3
Deletion	Chr1	27808563	27808573	10
Deletion	Chr2	31073655	31073660	5

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16942922	16942950	29
Insertion	Chr11	23181715	23181715	1
Insertion	Chr3	30815278	30815289	12
Insertion	Chr5	16060690	16060694	5
Insertion	Chr5	20644194	20644194	1
Insertion	Chr6	2738446	2738446	1	LOC_Os06g05970
Insertion	Chr8	11825270	11825393	124
Insertion	Chr8	3232481	3232483	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18798551	18816506	LOC_Os03g32900
Inversion	Chr3	18798554	18816513	LOC_Os03g32900
Inversion	Chr3	35056027	35366028	LOC_Os03g62440

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6659879	Chr5	2040949	LOC_Os05g04430
Translocation	Chr7	9604616	Chr3	25732270
Translocation	Chr10	11338618	Chr5	5644606	2
Translocation	Chr10	12730936	Chr3	19341190	2
Translocation	Chr9	14951257	Chr1	37409863
Translocation	Chr10	21612548	Chr6	25743081	2
Translocation	Chr12	25470874	Chr7	25233491
Translocation	Chr6	29601517	Chr3	9451331	LOC_Os03g17010

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