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| Mutant Information |
|---|
| Mutant Name | FN3770-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3770-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11942241 | G-A | HET | ||
| SBS | Chr1 | 12880587 | C-T | HET | ||
| SBS | Chr1 | 15772824 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g28140 |
| SBS | Chr1 | 1914662 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g04300 |
| SBS | Chr1 | 39497666 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g67970 |
| SBS | Chr10 | 12407400 | C-T | HET | ||
| SBS | Chr11 | 3159913 | T-C | Homo | ||
| SBS | Chr2 | 24720191 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g40784 |
| SBS | Chr2 | 25996797 | T-A | Homo | ||
| SBS | Chr2 | 9393481 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g16450 |
| SBS | Chr3 | 17228109 | T-G | HET | ||
| SBS | Chr3 | 21648696 | G-A | HET | ||
| SBS | Chr4 | 26809307 | T-C | HET | ||
| SBS | Chr4 | 29191667 | G-A | HET | ||
| SBS | Chr4 | 3842776 | G-A | Homo | STOP_GAINED | LOC_Os04g07240 |
| SBS | Chr4 | 8312027 | T-C | Homo | ||
| SBS | Chr5 | 13109564 | G-A | HET | ||
| SBS | Chr5 | 23023665 | T-G | Homo | ||
| SBS | Chr5 | 7022640 | A-G | HET | ||
| SBS | Chr5 | 7635143 | A-T | HET | ||
| SBS | Chr6 | 4918417 | C-T | HET | ||
| SBS | Chr7 | 17554920 | C-A | Homo | ||
| SBS | Chr7 | 18867666 | C-A | Homo | ||
| SBS | Chr7 | 7556896 | C-T | Homo | ||
| SBS | Chr8 | 4783329 | G-T | HET | ||
| SBS | Chr8 | 4783330 | G-T | HET | ||
| SBS | Chr8 | 6051423 | T-C | HET | ||
| SBS | Chr9 | 15266363 | T-A | HET | ||
| SBS | Chr9 | 21892746 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g37967 |
| SBS | Chr9 | 6214379 | C-T | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1382813 | 1382814 | 1 | LOC_Os09g02950 |
| Deletion | Chr5 | 5767347 | 5767370 | 23 | |
| Deletion | Chr3 | 7075761 | 7075762 | 1 | |
| Deletion | Chr8 | 8130900 | 8130906 | 6 | |
| Deletion | Chr8 | 11181878 | 11181879 | 1 | LOC_Os08g18730 |
| Deletion | Chr5 | 13862942 | 13862954 | 12 | |
| Deletion | Chr5 | 17160001 | 17200000 | 39999 | 7 |
| Deletion | Chr7 | 19859564 | 19859565 | 1 | LOC_Os07g33230 |
| Deletion | Chr12 | 20833001 | 20857000 | 23999 | 6 |
| Deletion | Chr5 | 25472396 | 25472406 | 10 | |
| Deletion | Chr2 | 32207793 | 32207795 | 2 | |
| Deletion | Chr2 | 32429946 | 32429952 | 6 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 1918329 | 1918329 | 1 | |
| Insertion | Chr2 | 22732061 | 22732104 | 44 | |
| Insertion | Chr3 | 5338265 | 5338266 | 2 | |
| Insertion | Chr8 | 16900172 | 16900175 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 8158024 | 8675830 | LOC_Os12g15222 |
| Inversion | Chr12 | 8158026 | 8675831 | LOC_Os12g15222 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 327627 | Chr4 | 11184837 | |
| Translocation | Chr11 | 2474541 | Chr6 | 24981541 | |
| Translocation | Chr5 | 6452546 | Chr2 | 6052088 | LOC_Os05g11414 |
| Translocation | Chr3 | 16448154 | Chr1 | 25435244 | |
| Translocation | Chr8 | 17989211 | Chr2 | 30232054 | LOC_Os02g49470 |
| Translocation | Chr12 | 23183991 | Chr8 | 4009895 | LOC_Os12g37760 |