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| Mutant Information |
|---|
| Mutant Name | FN3772-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3772-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20007921 | A-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g36170 |
| SBS | Chr1 | 20007931 | A-T | Homo | ||
| SBS | Chr1 | 29171269 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g50780 |
| SBS | Chr1 | 32168528 | G-A | HET | ||
| SBS | Chr10 | 18808441 | T-A | HET | ||
| SBS | Chr10 | 3162401 | G-A | HET | ||
| SBS | Chr11 | 11917951 | T-G | Homo | ||
| SBS | Chr2 | 14546695 | C-T | HET | ||
| SBS | Chr2 | 26056397 | G-A | Homo | ||
| SBS | Chr2 | 26838799 | G-A | Homo | ||
| SBS | Chr2 | 32698841 | T-A | Homo | ||
| SBS | Chr3 | 24619940 | T-C | HET | ||
| SBS | Chr5 | 5998941 | A-G | HET | ||
| SBS | Chr6 | 11688302 | T-A | HET | ||
| SBS | Chr6 | 16905849 | T-A | HET | ||
| SBS | Chr6 | 17778336 | G-A | HET | ||
| SBS | Chr6 | 3702362 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g07650 |
| SBS | Chr6 | 4752267 | C-T | Homo | ||
| SBS | Chr6 | 8619863 | T-C | Homo | ||
| SBS | Chr6 | 94280 | T-A | Homo | ||
| SBS | Chr7 | 7296632 | C-T | Homo | ||
| SBS | Chr8 | 12274410 | A-T | Homo | ||
| SBS | Chr8 | 26648629 | T-C | HET | ||
| SBS | Chr8 | 28207727 | C-A | HET | ||
| SBS | Chr8 | 28207728 | C-A | HET | ||
| SBS | Chr8 | 7148101 | A-T | HET | ||
| SBS | Chr8 | 8759792 | T-C | HET | ||
| SBS | Chr9 | 5337740 | T-G | Homo | ||
| SBS | Chr9 | 754631 | T-C | Homo |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 97619 | 97630 | 11 | |
| Deletion | Chr10 | 315499 | 315505 | 6 | |
| Deletion | Chr4 | 1299664 | 1299679 | 15 | LOC_Os04g03120 |
| Deletion | Chr2 | 1578479 | 1578486 | 7 | |
| Deletion | Chr3 | 2955001 | 3017000 | 61999 | 14 |
| Deletion | Chr3 | 3062419 | 3062437 | 18 | LOC_Os03g06110 |
| Deletion | Chr5 | 4164001 | 4256000 | 91999 | 14 |
| Deletion | Chr9 | 5391940 | 5391941 | 1 | LOC_Os09g09920 |
| Deletion | Chr9 | 6167282 | 6167284 | 2 | |
| Deletion | Chr9 | 8200487 | 8200488 | 1 | LOC_Os09g13940 |
| Deletion | Chr7 | 12229807 | 12229808 | 1 | |
| Deletion | Chr5 | 12383811 | 12383812 | 1 | |
| Deletion | Chr7 | 14005993 | 14005997 | 4 | |
| Deletion | Chr5 | 14285671 | 14285672 | 1 | LOC_Os05g24680 |
| Deletion | Chr8 | 19477413 | 19477414 | 1 | |
| Deletion | Chr8 | 23192055 | 23192066 | 11 | |
| Deletion | Chr11 | 24921001 | 24968000 | 46999 | 6 |
| Deletion | Chr11 | 26393438 | 26393446 | 8 | |
| Deletion | Chr2 | 27402962 | 27402968 | 6 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 31327455 | 31327455 | 1 | |
| Insertion | Chr4 | 16546520 | 16546520 | 1 | |
| Insertion | Chr7 | 23471923 | 23471923 | 1 | |
| Insertion | Chr8 | 11160608 | 11160608 | 1 | LOC_Os08g18210 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 5918908 | 6048147 | |
| Inversion | Chr4 | 5918912 | 6048149 | |
| Inversion | Chr10 | 7794812 | 8027190 | LOC_Os10g15250 |
| Inversion | Chr11 | 24920655 | 24976262 | LOC_Os11g41620 |
| Inversion | Chr11 | 24968148 | 24976262 | LOC_Os11g41620 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 5651963 | Chr8 | 3463702 | LOC_Os08g06280 |
| Translocation | Chr12 | 10087162 | Chr8 | 21909928 | |
| Translocation | Chr11 | 18055611 | Chr4 | 8527414 | |
| Translocation | Chr11 | 18058883 | Chr4 | 8527406 | |
| Translocation | Chr12 | 18301853 | Chr9 | 21567476 | LOC_Os12g30490 |