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| Mutant Information |
|---|
| Mutant Name | FN3773-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3773-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20464539 | T-A | HET | ||
| SBS | Chr1 | 32570228 | A-G | HET | ||
| SBS | Chr10 | 21773660 | A-G | Homo | ||
| SBS | Chr10 | 3773874 | T-C | HET | ||
| SBS | Chr11 | 18330163 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g31410 |
| SBS | Chr11 | 4510252 | C-T | HET | ||
| SBS | Chr12 | 23779575 | G-A | HET | ||
| SBS | Chr2 | 12264793 | T-C | HET | ||
| SBS | Chr2 | 22820493 | A-G | Homo | ||
| SBS | Chr2 | 34394048 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g56240 |
| SBS | Chr4 | 35172248 | A-T | HET | ||
| SBS | Chr5 | 12061092 | G-A | HET | ||
| SBS | Chr5 | 4760413 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g08694 |
| SBS | Chr5 | 4760414 | C-A | Homo | STOP_GAINED | LOC_Os05g08694 |
| SBS | Chr5 | 4768419 | A-C | Homo | ||
| SBS | Chr5 | 4867338 | T-A | HET | ||
| SBS | Chr6 | 16595957 | T-A | HET | ||
| SBS | Chr6 | 20161826 | T-C | HET | ||
| SBS | Chr6 | 21946478 | G-T | HET | ||
| SBS | Chr6 | 4872497 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g09570 |
| SBS | Chr7 | 15439718 | A-C | HET | ||
| SBS | Chr7 | 17486361 | T-G | HET | ||
| SBS | Chr7 | 17943177 | C-A | HET | ||
| SBS | Chr8 | 14906578 | G-A | HET | ||
| SBS | Chr8 | 3537677 | A-T | Homo | ||
| SBS | Chr9 | 4947649 | C-T | HET | ||
| SBS | Chr9 | 7306788 | G-A | HET | ||
| SBS | Chr9 | 9325055 | T-A | Homo |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 120424 | 120425 | 1 | |
| Deletion | Chr10 | 2542826 | 2542827 | 1 | |
| Deletion | Chr5 | 4544050 | 4544061 | 11 | LOC_Os05g08320 |
| Deletion | Chr1 | 5598162 | 5598166 | 4 | |
| Deletion | Chr1 | 17276591 | 17276603 | 12 | |
| Deletion | Chr10 | 22172497 | 22172501 | 4 | |
| Deletion | Chr7 | 23403330 | 23403340 | 10 | |
| Deletion | Chr1 | 35346001 | 35389000 | 42999 | 5 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 2633762 | 2633763 | 2 | |
| Insertion | Chr5 | 11965739 | 11965742 | 4 | |
| Insertion | Chr5 | 22246987 | 22246989 | 3 | |
| Insertion | Chr9 | 14334102 | 14334102 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 8288377 | 8475166 | LOC_Os09g14340 |
| Inversion | Chr1 | 11355621 | 11355751 | LOC_Os01g19970 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4909193 | Chr2 | 17732030 | LOC_Os08g08520 |
| Translocation | Chr8 | 7965676 | Chr3 | 20396941 | LOC_Os08g13390 |
| Translocation | Chr8 | 7966087 | Chr3 | 20396944 | LOC_Os08g13390 |
| Translocation | Chr10 | 16049805 | Chr9 | 376717 | |
| Translocation | Chr3 | 16447005 | Chr2 | 25541519 | |
| Translocation | Chr12 | 17128892 | Chr3 | 27794635 | |
| Translocation | Chr11 | 18164434 | Chr10 | 19652802 |