Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3774-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3774-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30317848 | G-T | Homo | ||
| SBS | Chr10 | 11239706 | G-T | HET | ||
| SBS | Chr10 | 4686187 | T-A | Homo | ||
| SBS | Chr10 | 6590989 | C-T | HET | ||
| SBS | Chr10 | 6590991 | C-A | HET | ||
| SBS | Chr10 | 6590992 | C-T | HET | ||
| SBS | Chr11 | 2032602 | G-A | Homo | ||
| SBS | Chr11 | 8087822 | G-A | Homo | ||
| SBS | Chr12 | 8969014 | G-A | HET | ||
| SBS | Chr2 | 14606479 | G-A | Homo | ||
| SBS | Chr2 | 18694748 | T-C | Homo | ||
| SBS | Chr2 | 22790803 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g37770 |
| SBS | Chr2 | 24961365 | C-A | HET | ||
| SBS | Chr2 | 4855091 | G-A | HET | ||
| SBS | Chr3 | 25097706 | C-T | HET | ||
| SBS | Chr3 | 30136614 | C-T | HET | ||
| SBS | Chr4 | 16631573 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g28160 |
| SBS | Chr4 | 1897813 | T-G | HET | ||
| SBS | Chr5 | 11873349 | C-A | HET | ||
| SBS | Chr5 | 13786045 | C-T | HET | ||
| SBS | Chr5 | 15251396 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g26210 |
| SBS | Chr6 | 17895739 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g30840 |
| SBS | Chr6 | 29373434 | A-T | HET | ||
| SBS | Chr7 | 18901965 | C-A | HET | ||
| SBS | Chr7 | 20126667 | G-T | HET | ||
| SBS | Chr7 | 20126676 | T-A | HET | ||
| SBS | Chr7 | 24190671 | G-A | HET | ||
| SBS | Chr8 | 4980156 | G-A | HET | ||
| SBS | Chr9 | 10036706 | T-G | HET | ||
| SBS | Chr9 | 6959783 | C-A | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 3165661 | 3165664 | 3 | |
| Deletion | Chr11 | 3723714 | 3723722 | 8 | |
| Deletion | Chr9 | 6853442 | 6853448 | 6 | |
| Deletion | Chr9 | 6975453 | 6975466 | 13 | |
| Deletion | Chr10 | 11383001 | 11438000 | 54999 | 10 |
| Deletion | Chr11 | 13456079 | 13456080 | 1 | |
| Deletion | Chr5 | 14360948 | 14360953 | 5 | LOC_Os05g24780 |
| Deletion | Chr2 | 23935141 | 23935142 | 1 | |
| Deletion | Chr1 | 25282034 | 25282036 | 2 | |
| Deletion | Chr12 | 26876185 | 26876186 | 1 | |
| Deletion | Chr1 | 30948319 | 30948325 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 21689157 | 21689158 | 2 | |
| Insertion | Chr2 | 21913119 | 21913119 | 1 | LOC_Os02g36290 |
| Insertion | Chr8 | 12465023 | 12465024 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 2085743 | 2086018 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 8618470 | Chr1 | 15312213 | 2 |
| Translocation | Chr8 | 9712766 | Chr3 | 16768797 | |
| Translocation | Chr6 | 20576911 | Chr4 | 9404447 | |
| Translocation | Chr6 | 28617868 | Chr1 | 7297383 | LOC_Os06g47200 |
| Translocation | Chr6 | 28618169 | Chr1 | 7297378 | LOC_Os06g47200 |
| Translocation | Chr3 | 29194440 | Chr1 | 31269094 |