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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23433671	T-C	Homo
SBS	Chr1	26549734	A-T	HET
SBS	Chr1	30200730	C-A	HET
SBS	Chr1	34055245	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	34055246	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g58920
SBS	Chr1	40627554	G-A	HET
SBS	Chr1	42905283	G-A	HET
SBS	Chr1	43164652	A-T	HET
SBS	Chr3	8187939	T-A	Homo
SBS	Chr3	11576569	T-C	Homo
SBS	Chr3	13427980	C-G	Homo
SBS	Chr3	24545608	G-A	HET
SBS	Chr3	24545609	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43810
SBS	Chr3	30226023	A-C	HET
SBS	Chr4	8908813	G-C	Homo
SBS	Chr4	14068303	C-T	Homo
SBS	Chr4	25265503	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g42710
SBS	Chr5	3426242	T-C	HET
SBS	Chr5	15590564	G-C	HET
SBS	Chr6	6896791	G-A	Homo
SBS	Chr6	26792533	G-A	Homo
SBS	Chr7	8994596	T-C	HET
SBS	Chr7	10907635	G-A	HET
SBS	Chr8	12442166	C-G	HET
SBS	Chr9	13392623	T-C	Homo
SBS	Chr9	13629967	A-T	HET
SBS	Chr9	13629968	A-T	HET
SBS	Chr9	16033820	T-A	HET
SBS	Chr9	22831291	C-T	HET
SBS	Chr10	7041875	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g12630
SBS	Chr10	12032087	A-G	HET
SBS	Chr10	19546145	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g36530
SBS	Chr11	1302826	T-A	HET
SBS	Chr11	14469649	G-C	HET
SBS	Chr11	28843211	G-T	Homo
SBS	Chr12	11157391	C-T	Homo
SBS	Chr12	22077751	T-C	HET
SBS	Chr12	26336025	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g42370

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	3244234	3244238	4	LOC_Os11g06660
Deletion	Chr7	8378805	8378817	12
Deletion	Chr12	8978051	8978053	2
Deletion	Chr9	10880030	10880032	2
Deletion	Chr5	11455459	11455461	2
Deletion	Chr5	16452214	16452246	32	LOC_Os05g28120
Deletion	Chr7	17111742	17111743	1
Deletion	Chr6	17226706	17226707	1
Deletion	Chr5	18494454	18494457	3
Deletion	Chr4	19724764	19724765	1	LOC_Os04g32720
Deletion	Chr8	20413679	20413689	10
Deletion	Chr5	27290447	27290453	6
Deletion	Chr1	27840941	27840951	10	LOC_Os01g48540
Deletion	Chr3	28009377	28009378	1	LOC_Os03g49170
Deletion	Chr1	32250614	32250615	1	LOC_Os01g56010
Deletion	Chr1	35329718	35329722	4	LOC_Os01g61060

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	4396816	4396817	2
Insertion	Chr12	17260985	17260985	1
Insertion	Chr4	11739351	11739740	390
Insertion	Chr10	15095266	15095266	1
Insertion	Chr11	23637084	23637084	1
Insertion	Chr12	15197681	15197684	4

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	166129	Chr9	15101692
Translocation	Chr4	2730976	Chr2	6409684	2
Translocation	Chr12	5179131	Chr8	15024737

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