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| Mutant Information |
|---|
| Mutant Name | FN3777-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3777-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26035782 | G-A | HET | ||
| SBS | Chr1 | 42976877 | A-G | Homo | ||
| SBS | Chr1 | 5078131 | C-T | Homo | ||
| SBS | Chr1 | 7048735 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g12740 |
| SBS | Chr10 | 14750346 | C-A | Homo | ||
| SBS | Chr10 | 2563377 | T-C | HET | ||
| SBS | Chr10 | 5112807 | G-A | HET | ||
| SBS | Chr10 | 7004900 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g12570 |
| SBS | Chr10 | 866118 | A-T | Homo | ||
| SBS | Chr11 | 21532447 | C-T | HET | ||
| SBS | Chr11 | 219143 | G-A | HET | ||
| SBS | Chr11 | 26591161 | G-C | HET | ||
| SBS | Chr2 | 18702548 | A-G | Homo | ||
| SBS | Chr2 | 29734314 | A-T | HET | ||
| SBS | Chr3 | 22411986 | G-A | HET | ||
| SBS | Chr3 | 31617015 | T-A | HET | ||
| SBS | Chr3 | 31617016 | A-C | HET | ||
| SBS | Chr3 | 31936662 | T-A | HET | ||
| SBS | Chr4 | 24317272 | T-C | Homo | ||
| SBS | Chr4 | 29430478 | G-T | HET | ||
| SBS | Chr4 | 33246146 | T-C | HET | ||
| SBS | Chr5 | 12387190 | C-T | HET | ||
| SBS | Chr5 | 14653510 | A-C | HET | ||
| SBS | Chr5 | 14998752 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g25780 |
| SBS | Chr5 | 21939681 | G-A | Homo | ||
| SBS | Chr6 | 11604823 | C-T | HET | ||
| SBS | Chr6 | 7431443 | C-T | HET | ||
| SBS | Chr7 | 20117245 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g33670 |
| SBS | Chr8 | 5197525 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g08940 |
| SBS | Chr9 | 19665607 | A-T | HET | ||
| SBS | Chr9 | 8155783 | G-A | HET | ||
| SBS | Chr9 | 8155784 | A-T | HET |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 360845 | 360854 | 9 | LOC_Os06g01610 |
| Deletion | Chr12 | 9383940 | 9383948 | 8 | LOC_Os12g16390 |
| Deletion | Chr1 | 10223776 | 10223778 | 2 | |
| Deletion | Chr3 | 11887080 | 11887094 | 14 | LOC_Os03g20949 |
| Deletion | Chr12 | 12162433 | 12162436 | 3 | |
| Deletion | Chr12 | 12813001 | 12868000 | 54999 | 11 |
| Deletion | Chr5 | 18376531 | 18376532 | 1 | |
| Deletion | Chr6 | 19402250 | 19402263 | 13 | |
| Deletion | Chr10 | 19796829 | 19796837 | 8 | |
| Deletion | Chr12 | 20374027 | 20374054 | 27 | |
| Deletion | Chr10 | 21635290 | 21635310 | 20 | LOC_Os10g40390 |
| Deletion | Chr6 | 23297760 | 23297763 | 3 | |
| Deletion | Chr12 | 27414990 | 27415311 | 321 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 6983538 | 6983538 | 1 | |
| Insertion | Chr7 | 23009225 | 23009317 | 93 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 2568797 | 2734803 | LOC_Os10g05230 |
| Inversion | Chr7 | 18842305 | 19156813 | LOC_Os07g31720 |
| Inversion | Chr7 | 18842317 | 19156820 | LOC_Os07g31720 |
| Inversion | Chr9 | 22646164 | 22646352 | LOC_Os09g39380 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 2568796 | Chr4 | 16578248 | 2 |
| Translocation | Chr10 | 2734801 | Chr4 | 16622951 | |
| Translocation | Chr4 | 7871808 | Chr2 | 34492089 | |
| Translocation | Chr12 | 9004129 | Chr2 | 3388225 | |
| Translocation | Chr12 | 9004365 | Chr2 | 3388224 | LOC_Os12g15770 |
| Translocation | Chr12 | 11274427 | Chr7 | 8261481 | LOC_Os12g19381 |
| Translocation | Chr6 | 16964016 | Chr4 | 34360523 | |
| Translocation | Chr6 | 16965171 | Chr4 | 33086884 | |
| Translocation | Chr6 | 20931162 | Chr1 | 22551268 | LOC_Os06g35870 |