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| Mutant Information |
|---|
| Mutant Name | FN3779-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3779-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12513187 | G-A | Homo | ||
| SBS | Chr1 | 21428496 | C-G | Homo | ||
| SBS | Chr1 | 34309199 | G-A | Homo | ||
| SBS | Chr1 | 40060862 | T-C | HET | ||
| SBS | Chr10 | 545318 | T-A | HET | ||
| SBS | Chr11 | 3078259 | G-A | Homo | ||
| SBS | Chr12 | 941246 | G-A | Homo | ||
| SBS | Chr2 | 11072068 | A-T | HET | ||
| SBS | Chr2 | 16095513 | C-T | HET | ||
| SBS | Chr2 | 24033710 | C-T | HET | ||
| SBS | Chr3 | 21577845 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g38850 |
| SBS | Chr3 | 32073112 | A-G | Homo | ||
| SBS | Chr4 | 23202197 | G-A | HET | ||
| SBS | Chr4 | 5088279 | C-T | HET | ||
| SBS | Chr4 | 6144305 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g11240 |
| SBS | Chr5 | 11130209 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g19180 |
| SBS | Chr5 | 22647895 | T-C | Homo | ||
| SBS | Chr5 | 2314506 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g04820 |
| SBS | Chr6 | 14350707 | A-C | Homo | ||
| SBS | Chr6 | 28304037 | G-A | Homo | ||
| SBS | Chr6 | 29800774 | G-A | HET | ||
| SBS | Chr6 | 7797539 | G-C | Homo | ||
| SBS | Chr7 | 3545504 | A-T | HET | ||
| SBS | Chr7 | 9430145 | G-A | HET | ||
| SBS | Chr8 | 5923384 | G-A | HET | ||
| SBS | Chr9 | 10194420 | G-A | Homo | ||
| SBS | Chr9 | 11106990 | C-T | HET | ||
| SBS | Chr9 | 15305762 | G-A | Homo | ||
| SBS | Chr9 | 22275511 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g38768 |
| SBS | Chr9 | 6740015 | T-A | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 984383 | 984384 | 1 | |
| Deletion | Chr11 | 3078209 | 3078235 | 26 | |
| Deletion | Chr6 | 7608594 | 7608603 | 9 | |
| Deletion | Chr6 | 9639417 | 9639418 | 1 | |
| Deletion | Chr6 | 9652631 | 9652632 | 1 | |
| Deletion | Chr6 | 9675445 | 9675461 | 16 | |
| Deletion | Chr7 | 10271446 | 10271457 | 11 | |
| Deletion | Chr7 | 14128723 | 14128726 | 3 | |
| Deletion | Chr2 | 15212394 | 15212418 | 24 | |
| Deletion | Chr6 | 16076967 | 16076968 | 1 | LOC_Os06g28310 |
| Deletion | Chr4 | 16541067 | 16541085 | 18 | LOC_Os04g28010 |
| Deletion | Chr6 | 16767398 | 16767403 | 5 | |
| Deletion | Chr7 | 18123696 | 18123846 | 150 | |
| Deletion | Chr1 | 28214623 | 28214625 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 15399535 | 15399848 | 314 | |
| Insertion | Chr5 | 26267735 | 26267735 | 1 | LOC_Os05g45250 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 160296 | 170861 | |
| Inversion | Chr11 | 160320 | 170870 | |
| Inversion | Chr3 | 16926115 | 17827655 | LOC_Os03g31290 |
| Inversion | Chr3 | 16926128 | 17827658 | LOC_Os03g31290 |
| Inversion | Chr8 | 19837770 | 19863009 | LOC_Os08g32020 |
| Inversion | Chr11 | 27986372 | 28950213 | LOC_Os11g46210 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 987054 | Chr2 | 19285131 | |
| Translocation | Chr12 | 8402031 | Chr4 | 10835527 | |
| Translocation | Chr7 | 21360805 | Chr1 | 23971270 | 2 |
| Translocation | Chr7 | 21360815 | Chr1 | 23970600 | 2 |
| Translocation | Chr4 | 32666907 | Chr1 | 10891110 |