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Mutant Information

Mutant Name	FN378-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN378-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6266590	G-T	HOMO	INTERGENIC
SBS	Chr1	13807116	G-T	HET	INTERGENIC
SBS	Chr1	16560679	T-C	HET	INTERGENIC
SBS	Chr1	23110474	C-T	HET	INTERGENIC
SBS	Chr2	32394853	T-A	HOMO	SPLICE_SITE_REGION
SBS	Chr3	4835027	G-A	HOMO	INTERGENIC
SBS	Chr3	11988939	G-A	HOMO	INTERGENIC
SBS	Chr5	6973322	G-A	HET	INTERGENIC
SBS	Chr5	15227733	C-T	HET	SYNONYMOUS_CODING
SBS	Chr7	7476504	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13040
SBS	Chr7	15855137	C-A	HET	INTERGENIC
SBS	Chr7	16132711	C-T	HET	INTERGENIC
SBS	Chr7	28985807	T-A	HET	UTR_5_PRIME
SBS	Chr11	694955	G-A	HET	INTERGENIC
SBS	Chr11	5452620	T-C	HET	INTERGENIC
SBS	Chr11	6371069	G-T	HET	INTERGENIC
SBS	Chr11	16749525	G-A	HOMO	INTERGENIC
SBS	Chr12	541264	C-A	HET	INTERGENIC
SBS	Chr12	15959928	T-C	HOMO	INTRON

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1452680	1452684	4
Deletion	Chr5	1839303	1839309	6
Deletion	Chr10	3911893	3911910	17	LOC_Os10g07400
Deletion	Chr3	4666254	4666406	152	LOC_Os03g08980
Deletion	Chr6	13162432	13162439	7
Deletion	Chr12	14647981	14648600	619	LOC_Os12g25390
Deletion	Chr2	21389933	21389935	2
Deletion	Chr12	26268746	26268750	4	LOC_Os12g42280
Deletion	Chr11	26554001	27118000	564000	80
Deletion	Chr3	27490061	27490068	7
Deletion	Chr1	36469694	36469698	4
Deletion	Chr1	38400931	38400942	11	LOC_Os01g66120

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	13730586	13730586	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11851308	13704655
Inversion	Chr11	27118003	27673217	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	2966114	Chr1	35588047	2
Translocation	Chr11	26554178	Chr1	28606971	2
Translocation	Chr4	27553609	Chr1	28606610	2
Translocation	Chr11	27673209	Chr1	28612206	LOC_Os11g45740