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| Mutant Information |
|---|
| Mutant Name | FN3780-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3780-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 33198489 | T-C | Homo | ||
| SBS | Chr10 | 16863813 | A-T | HET | ||
| SBS | Chr10 | 2410284 | G-T | HET | ||
| SBS | Chr10 | 253533 | C-T | HET | ||
| SBS | Chr10 | 3158462 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g06170 |
| SBS | Chr11 | 14100823 | T-C | HET | ||
| SBS | Chr11 | 20783228 | T-A | Homo | ||
| SBS | Chr11 | 8886280 | T-A | Homo | ||
| SBS | Chr2 | 25552295 | C-T | HET | ||
| SBS | Chr3 | 12511038 | T-A | HET | ||
| SBS | Chr3 | 13758292 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g24190 |
| SBS | Chr3 | 14005514 | T-C | HET | ||
| SBS | Chr3 | 18107334 | C-T | Homo | ||
| SBS | Chr3 | 32335134 | G-A | HET | ||
| SBS | Chr3 | 7409496 | C-A | Homo | ||
| SBS | Chr3 | 7409497 | T-A | Homo | ||
| SBS | Chr4 | 13888214 | G-A | HET | ||
| SBS | Chr4 | 21239128 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g34950 |
| SBS | Chr4 | 2674483 | T-A | HET | ||
| SBS | Chr4 | 31387178 | C-T | Homo | ||
| SBS | Chr4 | 7286479 | C-T | HET | ||
| SBS | Chr5 | 20860796 | C-T | HET | ||
| SBS | Chr5 | 6805368 | C-G | HET | ||
| SBS | Chr6 | 21568261 | A-C | Homo | ||
| SBS | Chr7 | 22812542 | A-T | HET | ||
| SBS | Chr7 | 28074986 | T-C | HET | ||
| SBS | Chr8 | 26293563 | A-C | HET | ||
| SBS | Chr8 | 5976025 | C-T | HET | ||
| SBS | Chr8 | 6481005 | G-T | HET | ||
| SBS | Chr8 | 8359394 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g13950 |
| SBS | Chr9 | 13797949 | T-G | Homo | ||
| SBS | Chr9 | 21116762 | T-C | HET | ||
| SBS | Chr9 | 2637885 | G-A | HET | ||
| SBS | Chr9 | 5664825 | T-A | HET |
Deletions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 20871842 | 20871850 | 8 | |
| Deletion | Chr1 | 21661073 | 21661083 | 10 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 40308970 | 40308970 | 1 | LOC_Os01g69810 |
| Insertion | Chr10 | 12723232 | 12723232 | 1 | |
| Insertion | Chr11 | 11289798 | 11289798 | 1 | |
| Insertion | Chr4 | 1579844 | 1579943 | 100 |
Inversions: 8
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 5453069 | 5538546 | LOC_Os04g10100 |
| Inversion | Chr4 | 5453093 | 5538545 | LOC_Os04g10100 |
| Inversion | Chr5 | 7126604 | 7307359 | 2 |
| Inversion | Chr5 | 7126611 | 7307382 | 2 |
| Inversion | Chr3 | 14963606 | 14992713 | |
| Inversion | Chr3 | 14963617 | 14992712 | |
| Inversion | Chr8 | 21374937 | 21770364 | LOC_Os08g34650 |
| Inversion | Chr8 | 21374947 | 21770361 | LOC_Os08g34650 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5739577 | Chr2 | 10393638 | LOC_Os12g10700 |
| Translocation | Chr12 | 5742150 | Chr2 | 10393633 | LOC_Os12g10710 |
| Translocation | Chr3 | 10134117 | Chr1 | 7229198 | |
| Translocation | Chr12 | 10157082 | Chr1 | 3090994 | |
| Translocation | Chr10 | 12226487 | Chr9 | 20613099 | |
| Translocation | Chr11 | 19842342 | Chr1 | 19348945 |