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| Mutant Information |
|---|
| Mutant Name | FN3781-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3781-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17094403 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g31260 |
| SBS | Chr10 | 19853853 | A-C | HET | ||
| SBS | Chr12 | 15720481 | A-G | HET | ||
| SBS | Chr2 | 33314871 | C-A | Homo | ||
| SBS | Chr3 | 16976450 | T-G | Homo | ||
| SBS | Chr3 | 17538215 | G-T | HET | ||
| SBS | Chr4 | 26500625 | T-A | HET | ||
| SBS | Chr5 | 13951255 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g24170 |
| SBS | Chr5 | 2004108 | C-T | Homo | ||
| SBS | Chr5 | 20377851 | C-T | HET | ||
| SBS | Chr5 | 3992940 | T-A | HET | ||
| SBS | Chr5 | 9141158 | G-A | HET | ||
| SBS | Chr6 | 4202611 | G-A | Homo | ||
| SBS | Chr6 | 5620538 | A-T | HET | ||
| SBS | Chr7 | 15557053 | C-A | Homo | ||
| SBS | Chr8 | 12966198 | A-C | HET | ||
| SBS | Chr8 | 19595099 | G-C | Homo | ||
| SBS | Chr8 | 19595105 | G-A | Homo | ||
| SBS | Chr8 | 19595106 | G-A | Homo | ||
| SBS | Chr9 | 11724773 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g19610 |
| SBS | Chr9 | 21078635 | A-G | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 102473 | 102474 | 1 | |
| Deletion | Chr11 | 13788825 | 13788827 | 2 | |
| Deletion | Chr11 | 14149392 | 14149393 | 1 | |
| Deletion | Chr12 | 14539801 | 14539803 | 2 | |
| Deletion | Chr6 | 16902001 | 16907000 | 4999 | LOC_Os06g29480 |
| Deletion | Chr5 | 18711296 | 18711297 | 1 | |
| Deletion | Chr5 | 19624620 | 19624623 | 3 | |
| Deletion | Chr10 | 20757558 | 20757560 | 2 | |
| Deletion | Chr12 | 21604168 | 21604170 | 2 | |
| Deletion | Chr9 | 22098561 | 22098574 | 13 | |
| Deletion | Chr9 | 22595185 | 22595186 | 1 | |
| Deletion | Chr3 | 23771352 | 23771356 | 4 | |
| Deletion | Chr4 | 30939771 | 30939776 | 5 | LOC_Os04g52090 |
| Deletion | Chr4 | 33890001 | 33940000 | 49999 | 6 |
| Deletion | Chr4 | 34366987 | 34366997 | 10 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 18762986 | 18762986 | 1 | LOC_Os11g31920 |
| Insertion | Chr7 | 11919344 | 11919344 | 1 | LOC_Os07g20620 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 2256953 | 2257064 | LOC_Os06g05110 |
| Inversion | Chr6 | 4207384 | 4207517 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 3577199 | Chr1 | 3977407 | LOC_Os01g08190 |
| Translocation | Chr12 | 3589995 | Chr1 | 3732556 | LOC_Os01g07770 |
| Translocation | Chr8 | 12316710 | Chr1 | 9100256 | LOC_Os01g16130 |
| Translocation | Chr7 | 16928313 | Chr4 | 6466726 | |
| Translocation | Chr6 | 21366154 | Chr4 | 150582 |