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| Mutant Information |
|---|
| Mutant Name | FN3782-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3782-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 30873965 | G-A | HET | ||
| SBS | Chr1 | 36457828 | A-G | HET | ||
| SBS | Chr1 | 37365081 | T-A | HET | ||
| SBS | Chr1 | 37365082 | G-A | HET | ||
| SBS | Chr1 | 7008403 | G-T | HET | ||
| SBS | Chr1 | 7112700 | A-G | HET | ||
| SBS | Chr1 | 7112704 | A-C | HET | ||
| SBS | Chr10 | 15224599 | C-T | HET | ||
| SBS | Chr10 | 15498865 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g29810 |
| SBS | Chr11 | 12142214 | C-T | HET | ||
| SBS | Chr11 | 16563605 | T-C | HET | ||
| SBS | Chr11 | 17966460 | G-T | HET | ||
| SBS | Chr11 | 17966461 | C-T | HET | ||
| SBS | Chr11 | 25481328 | C-T | HET | ||
| SBS | Chr11 | 27320725 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g45130 |
| SBS | Chr12 | 11468824 | T-G | Homo | ||
| SBS | Chr2 | 32540992 | T-C | Homo | ||
| SBS | Chr2 | 9198593 | A-G | HET | ||
| SBS | Chr3 | 21434349 | C-A | HET | ||
| SBS | Chr3 | 5049529 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g10040 |
| SBS | Chr4 | 12648481 | G-A | HET | ||
| SBS | Chr4 | 26353955 | T-C | Homo | ||
| SBS | Chr4 | 3116779 | C-T | Homo | STOP_GAINED | LOC_Os04g06010 |
| SBS | Chr4 | 32639773 | T-A | HET | ||
| SBS | Chr5 | 29875405 | G-A | HET | ||
| SBS | Chr5 | 6975153 | C-T | HET | ||
| SBS | Chr6 | 16696899 | C-A | HET | ||
| SBS | Chr6 | 19850157 | T-A | HET | ||
| SBS | Chr8 | 11654830 | C-A | HET | ||
| SBS | Chr8 | 119680 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g01180 |
| SBS | Chr8 | 18182353 | G-T | HET | ||
| SBS | Chr8 | 1924704 | A-G | HET | ||
| SBS | Chr8 | 27378750 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g43320 |
| SBS | Chr8 | 28232512 | G-C | Homo | ||
| SBS | Chr8 | 9299331 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g15290 |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 724277 | 724281 | 4 | |
| Deletion | Chr4 | 3404356 | 3404357 | 1 | |
| Deletion | Chr3 | 6995908 | 6995911 | 3 | |
| Deletion | Chr11 | 7611001 | 7631000 | 19999 | 3 |
| Deletion | Chr11 | 13160475 | 13160482 | 7 | LOC_Os11g22880 |
| Deletion | Chr3 | 15347166 | 15347199 | 33 | |
| Deletion | Chr8 | 17544177 | 17544196 | 19 | |
| Deletion | Chr12 | 20465001 | 20469000 | 3999 | |
| Deletion | Chr11 | 22501955 | 22501958 | 3 | |
| Deletion | Chr8 | 22629536 | 22629541 | 5 | |
| Deletion | Chr2 | 24062547 | 24062555 | 8 | |
| Deletion | Chr11 | 25649410 | 25649411 | 1 | LOC_Os11g42610 |
| Deletion | Chr6 | 26746428 | 26746429 | 1 | |
| Deletion | Chr11 | 27224231 | 27224236 | 5 | LOC_Os11g44960 |
| Deletion | Chr6 | 30168785 | 30168800 | 15 | |
| Deletion | Chr3 | 30810921 | 30810922 | 1 | |
| Deletion | Chr6 | 31180066 | 31180102 | 36 | |
| Deletion | Chr1 | 39878848 | 39878853 | 5 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 10740316 | 10753035 | 2 |
| Inversion | Chr11 | 10740317 | 10753037 | 2 |
| Inversion | Chr8 | 18106634 | 18120903 | LOC_Os08g29530 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 3653304 | Chr9 | 6641953 | |
| Translocation | Chr7 | 13265786 | Chr3 | 14802125 | LOC_Os07g23480 |
| Translocation | Chr6 | 14068299 | Chr4 | 19148973 | LOC_Os04g31971 |
| Translocation | Chr8 | 14996783 | Chr1 | 41858429 | |
| Translocation | Chr4 | 16416858 | Chr3 | 31013586 | LOC_Os03g54091 |