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Mutant Information

Mutant NameFN3783-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3783-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 20
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr115873160G-AHomo
SBSChr118129134T-AHomo
SBSChr127828261C-GHET
SBSChr1020230698G-AHomo
SBSChr1214520502G-AHomo
SBSChr1225750594C-THET
SBSChr230611626C-THET
SBSChr232916531C-AHET
SBSChr27833006A-THET
SBSChr314601544C-AHET
SBSChr315245945C-THET
SBSChr318757909C-THET
SBSChr323594977T-CHET
SBSChr323843187G-THET
SBSChr324048109C-GHET
SBSChr331132503T-CHET
SBSChr424696491T-CHET
SBSChr520542035T-CHomo
SBSChr71128781G-AHET
SBSChr89600886T-AHET

Deletions: 13
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr7101399110139976
DeletionChr103402221340224120
DeletionChr1491064749106503
DeletionChr2713909871391002
DeletionChr10921251592125161
DeletionChr9962418896241968
DeletionChr112680965126809683
DeletionChr813578759135787601
DeletionChr113669894136698984
DeletionChr12201980012041600021799942
DeletionChr1220240099202401001
DeletionChr322191898221919046LOC_Os03g39920
DeletionChr424842001249320008999917

Insertions: 4
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1012849436128494372
InsertionChr520921055209210562
InsertionChr7257204825720481
InsertionChr8205658120565822

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr31107349411389093LOC_Os03g19690
InversionChr31107351611389097LOC_Os03g19690
InversionChr1017435380177431092
InversionChr1017435390181526752

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr1213550655Chr621523999LOC_Os12g23830
TranslocationChr1017743112Chr122736545LOC_Os10g33650
TranslocationChr1018152665Chr122736548LOC_Os10g34030
TranslocationChr1018195219Chr93016438LOC_Os09g06400
TranslocationChr920408203Chr35235471
TranslocationChr1127105527Chr418553484LOC_Os04g31040