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| Mutant Information |
|---|
| Mutant Name | FN3783-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3783-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15873160 | G-A | Homo | ||
| SBS | Chr1 | 18129134 | T-A | Homo | ||
| SBS | Chr1 | 27828261 | C-G | HET | ||
| SBS | Chr10 | 20230698 | G-A | Homo | ||
| SBS | Chr12 | 14520502 | G-A | Homo | ||
| SBS | Chr12 | 25750594 | C-T | HET | ||
| SBS | Chr2 | 30611626 | C-T | HET | ||
| SBS | Chr2 | 32916531 | C-A | HET | ||
| SBS | Chr2 | 7833006 | A-T | HET | ||
| SBS | Chr3 | 14601544 | C-A | HET | ||
| SBS | Chr3 | 15245945 | C-T | HET | ||
| SBS | Chr3 | 18757909 | C-T | HET | ||
| SBS | Chr3 | 23594977 | T-C | HET | ||
| SBS | Chr3 | 23843187 | G-T | HET | ||
| SBS | Chr3 | 24048109 | C-G | HET | ||
| SBS | Chr3 | 31132503 | T-C | HET | ||
| SBS | Chr4 | 24696491 | T-C | HET | ||
| SBS | Chr5 | 20542035 | T-C | Homo | ||
| SBS | Chr7 | 1128781 | G-A | HET | ||
| SBS | Chr8 | 9600886 | T-A | HET |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1013991 | 1013997 | 6 | |
| Deletion | Chr10 | 3402221 | 3402241 | 20 | |
| Deletion | Chr1 | 4910647 | 4910650 | 3 | |
| Deletion | Chr2 | 7139098 | 7139100 | 2 | |
| Deletion | Chr10 | 9212515 | 9212516 | 1 | |
| Deletion | Chr9 | 9624188 | 9624196 | 8 | |
| Deletion | Chr1 | 12680965 | 12680968 | 3 | |
| Deletion | Chr8 | 13578759 | 13578760 | 1 | |
| Deletion | Chr1 | 13669894 | 13669898 | 4 | |
| Deletion | Chr12 | 20198001 | 20416000 | 217999 | 42 |
| Deletion | Chr12 | 20240099 | 20240100 | 1 | |
| Deletion | Chr3 | 22191898 | 22191904 | 6 | LOC_Os03g39920 |
| Deletion | Chr4 | 24842001 | 24932000 | 89999 | 17 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 12849436 | 12849437 | 2 | |
| Insertion | Chr5 | 20921055 | 20921056 | 2 | |
| Insertion | Chr7 | 2572048 | 2572048 | 1 | |
| Insertion | Chr8 | 2056581 | 2056582 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 11073494 | 11389093 | LOC_Os03g19690 |
| Inversion | Chr3 | 11073516 | 11389097 | LOC_Os03g19690 |
| Inversion | Chr10 | 17435380 | 17743109 | 2 |
| Inversion | Chr10 | 17435390 | 18152675 | 2 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 13550655 | Chr6 | 21523999 | LOC_Os12g23830 |
| Translocation | Chr10 | 17743112 | Chr1 | 22736545 | LOC_Os10g33650 |
| Translocation | Chr10 | 18152665 | Chr1 | 22736548 | LOC_Os10g34030 |
| Translocation | Chr10 | 18195219 | Chr9 | 3016438 | LOC_Os09g06400 |
| Translocation | Chr9 | 20408203 | Chr3 | 5235471 | |
| Translocation | Chr11 | 27105527 | Chr4 | 18553484 | LOC_Os04g31040 |