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| Mutant Information |
|---|
| Mutant Name | FN3785-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3785-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27206905 | T-A | Homo | ||
| SBS | Chr1 | 34192059 | G-T | HET | ||
| SBS | Chr1 | 34192060 | G-T | HET | ||
| SBS | Chr10 | 4045257 | C-G | HET | ||
| SBS | Chr11 | 18838613 | G-A | Homo | ||
| SBS | Chr11 | 4550202 | C-T | Homo | ||
| SBS | Chr12 | 23020542 | A-T | HET | ||
| SBS | Chr12 | 23020543 | A-T | HET | ||
| SBS | Chr12 | 25436603 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g41080 |
| SBS | Chr12 | 27192540 | C-T | Homo | ||
| SBS | Chr2 | 10377003 | T-A | HET | ||
| SBS | Chr2 | 11770534 | T-A | HET | ||
| SBS | Chr2 | 13786597 | C-A | HET | ||
| SBS | Chr2 | 14849318 | G-A | HET | ||
| SBS | Chr2 | 29865869 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g48790 |
| SBS | Chr3 | 22882489 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g41154 |
| SBS | Chr3 | 30157618 | C-T | Homo | ||
| SBS | Chr5 | 12804950 | G-A | Homo | ||
| SBS | Chr5 | 13831383 | G-A | HET | ||
| SBS | Chr6 | 10593658 | C-T | HET | ||
| SBS | Chr7 | 12403177 | C-T | Homo | ||
| SBS | Chr7 | 14976901 | C-T | Homo | ||
| SBS | Chr7 | 18311070 | T-G | HET | ||
| SBS | Chr7 | 20876147 | G-A | HET | ||
| SBS | Chr7 | 20876149 | G-A | HET | ||
| SBS | Chr7 | 25702314 | G-A | Homo | ||
| SBS | Chr8 | 18647692 | T-C | Homo | ||
| SBS | Chr8 | 6191888 | G-A | HET | STOP_GAINED | LOC_Os08g10540 |
| SBS | Chr9 | 3997712 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07860 |
| SBS | Chr9 | 6336655 | G-A | HET | STOP_GAINED | LOC_Os09g11390 |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2800340 | 2800379 | 39 | |
| Deletion | Chr4 | 10961889 | 10961892 | 3 | |
| Deletion | Chr1 | 11488869 | 11489376 | 507 | LOC_Os01g20200 |
| Deletion | Chr3 | 17308988 | 17308989 | 1 | |
| Deletion | Chr7 | 22243256 | 22243258 | 2 | |
| Deletion | Chr4 | 23435488 | 23435495 | 7 | |
| Deletion | Chr12 | 24386001 | 24557000 | 170999 | 22 |
| Deletion | Chr2 | 26835463 | 26835464 | 1 | |
| Deletion | Chr4 | 32822179 | 32822180 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 39782010 | 39782011 | 2 | |
| Insertion | Chr10 | 1675732 | 1675846 | 115 | |
| Insertion | Chr11 | 18198569 | 18198569 | 1 | LOC_Os11g31220 |
| Insertion | Chr8 | 11235992 | 11235992 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 16539321 | 17176959 | LOC_Os02g27950 |
| Inversion | Chr2 | 16539328 | 17160444 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 2777013 | Chr4 | 3631573 | |
| Translocation | Chr8 | 16636433 | Chr6 | 1224885 | |
| Translocation | Chr11 | 18148208 | Chr6 | 6320456 | |
| Translocation | Chr8 | 23386247 | Chr7 | 24488804 |