Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3786-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3786-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 18759231 | T-C | HET | ||
| SBS | Chr10 | 21051295 | G-A | HET | ||
| SBS | Chr11 | 24851554 | G-C | HET | ||
| SBS | Chr11 | 4874321 | T-A | Homo | ||
| SBS | Chr12 | 21667772 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g35640 |
| SBS | Chr12 | 8329019 | G-C | HET | ||
| SBS | Chr2 | 15026846 | C-A | Homo | ||
| SBS | Chr2 | 18512009 | T-C | Homo | ||
| SBS | Chr2 | 4209482 | C-A | HET | ||
| SBS | Chr3 | 17869162 | T-C | HET | ||
| SBS | Chr4 | 19078343 | G-A | HET | ||
| SBS | Chr4 | 44598 | C-T | HET | ||
| SBS | Chr5 | 1441007 | C-T | HET | ||
| SBS | Chr5 | 16335004 | A-C | Homo | ||
| SBS | Chr5 | 1668415 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03770 |
| SBS | Chr5 | 20191965 | G-T | HET | ||
| SBS | Chr5 | 22481811 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g38350 |
| SBS | Chr6 | 20431286 | G-A | HET | ||
| SBS | Chr6 | 20431287 | G-A | HET | ||
| SBS | Chr6 | 528317 | C-T | HET | ||
| SBS | Chr7 | 10663979 | G-C | Homo | ||
| SBS | Chr7 | 728376 | G-A | Homo | ||
| SBS | Chr7 | 7464412 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13010 |
| SBS | Chr8 | 8049933 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g13540 |
| SBS | Chr8 | 8287653 | G-A | Homo | ||
| SBS | Chr9 | 16257694 | G-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 4615502 | 4615506 | 4 | |
| Deletion | Chr10 | 6686414 | 6686415 | 1 | LOC_Os10g12030 |
| Deletion | Chr7 | 9800188 | 9800207 | 19 | LOC_Os07g16710 |
| Deletion | Chr12 | 12400194 | 12400197 | 3 | |
| Deletion | Chr11 | 13228789 | 13228812 | 23 | |
| Deletion | Chr10 | 21701654 | 21701655 | 1 | LOC_Os10g40540 |
| Deletion | Chr12 | 21740687 | 21740692 | 5 | LOC_Os12g35720 |
| Deletion | Chr1 | 26400530 | 26400540 | 10 | |
| Deletion | Chr2 | 27530656 | 27530657 | 1 | |
| Deletion | Chr6 | 29060001 | 29149000 | 88999 | 17 |
| Deletion | Chr2 | 29753476 | 29753493 | 17 | LOC_Os02g48600 |
| Deletion | Chr6 | 29907110 | 29907111 | 1 | LOC_Os06g49360 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 23047852 | 23047853 | 2 | |
| Insertion | Chr3 | 16643399 | 16643402 | 4 | |
| Insertion | Chr3 | 23126868 | 23126869 | 2 | |
| Insertion | Chr8 | 11542155 | 11542155 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 10009244 | 10049944 | 2 |
| Inversion | Chr1 | 10049944 | 10079666 | 2 |
| Inversion | Chr11 | 16026571 | 16031864 | LOC_Os11g27840 |
| Inversion | Chr9 | 19785188 | 19951493 | 2 |
| Inversion | Chr9 | 19785200 | 19951659 | 2 |
| Inversion | Chr6 | 29008264 | 29026810 | |
| Inversion | Chr6 | 29008277 | 29146503 | LOC_Os06g48180 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr2 | 3969420 | Chr1 | 10009247 | LOC_Os01g17396 |
| Translocation | Chr2 | 3969426 | Chr1 | 10010051 | LOC_Os01g17396 |
| Translocation | Chr11 | 13809949 | Chr2 | 5640165 | LOC_Os02g10710 |
| Translocation | Chr11 | 13919652 | Chr6 | 29026819 | |
| Translocation | Chr11 | 13919680 | Chr6 | 29059703 | LOC_Os06g48040 |
| Translocation | Chr5 | 13933298 | Chr1 | 31269223 | |
| Translocation | Chr12 | 19447452 | Chr1 | 23042670 |