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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28707555	G-A	HET
SBS	Chr2	14045022	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24230
SBS	Chr2	18910876	C-T	HET
SBS	Chr2	25148223	G-A	Homo
SBS	Chr4	1598047	G-T	Homo
SBS	Chr4	2612529	C-T	HET
SBS	Chr4	18246334	G-C	HET
SBS	Chr4	24947603	A-G	Homo
SBS	Chr5	27657840	T-A	HET
SBS	Chr5	28850277	G-A	HET
SBS	Chr6	3715640	G-A	Homo
SBS	Chr6	16703543	C-T	HET
SBS	Chr6	26927231	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g44590
SBS	Chr8	7170581	C-T	Homo
SBS	Chr8	15722761	G-A	HET
SBS	Chr8	17598255	G-A	Homo
SBS	Chr8	22535836	T-C	HET
SBS	Chr8	23941647	A-G	HET
SBS	Chr9	17041102	C-T	HET
SBS	Chr10	1840288	A-T	Homo
SBS	Chr11	24661341	G-A	Homo
SBS	Chr12	4472591	A-T	Homo

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3875660	3875676	16
Deletion	Chr1	4093605	4093606	1
Deletion	Chr12	4560001	4671000	110999	11
Deletion	Chr3	8204864	8204865	1
Deletion	Chr10	10198047	10198048	1	LOC_Os10g20280
Deletion	Chr4	12527674	12527675	1
Deletion	Chr10	20002574	20002582	8
Deletion	Chr11	23932052	23932054	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	10575288	10575289	2
Insertion	Chr5	11146288	11146288	1
Insertion	Chr10	14861304	14861304	1
Insertion	Chr12	770015	770016	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18326913	18754144	LOC_Os10g34380
Inversion	Chr10	18326922	18754149	LOC_Os10g34380

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	10347786	Chr2	16818412	LOC_Os08g16900
Translocation	Chr8	16707202	Chr4	1747530	LOC_Os08g27360
Translocation	Chr8	16707233	Chr3	18172603	LOC_Os08g27360

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