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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10037269	G-A	HET
SBS	Chr1	29913921	G-A	HET
SBS	Chr10	11497152	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g22220
SBS	Chr10	459585	C-G	HET
SBS	Chr10	878262	T-A	HET
SBS	Chr11	10667584	G-A	Homo	STOP_GAINED	LOC_Os11g18790
SBS	Chr12	8150281	A-G	HET
SBS	Chr2	12541322	C-G	HET
SBS	Chr2	14640203	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25170
SBS	Chr2	2086172	C-T	HET
SBS	Chr2	22354305	C-A	HET
SBS	Chr2	22463935	T-A	HET
SBS	Chr2	28038436	C-T	HET
SBS	Chr2	4119779	G-A	HET
SBS	Chr3	11930189	G-A	HET
SBS	Chr3	1255138	A-T	HET
SBS	Chr3	16457725	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28990
SBS	Chr3	1750144	C-T	HET
SBS	Chr3	19696004	C-T	HET
SBS	Chr3	22165228	A-C	HET
SBS	Chr3	26428418	G-A	HET
SBS	Chr3	30294910	G-A	Homo
SBS	Chr4	11172300	C-A	Homo
SBS	Chr4	30454485	G-T	Homo
SBS	Chr4	8890454	C-T	HET
SBS	Chr5	24897450	G-C	HET
SBS	Chr5	5075546	T-C	HET
SBS	Chr5	5902858	T-G	HET
SBS	Chr6	10787475	T-A	HET
SBS	Chr6	21820800	C-G	HET
SBS	Chr6	25653899	C-T	HET
SBS	Chr6	5998268	A-G	HET
SBS	Chr7	18371356	G-A	HET
SBS	Chr7	27358506	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45840
SBS	Chr8	10879557	A-G	Homo
SBS	Chr8	21260309	T-C	Homo
SBS	Chr8	22420803	A-C	Homo
SBS	Chr8	25752811	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g40670
SBS	Chr8	27876488	A-G	Homo
SBS	Chr8	27937548	G-A	Homo
SBS	Chr8	3474122	G-A	Homo

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2417095	2417099	4
Deletion	Chr11	2536556	2536559	3
Deletion	Chr2	4015220	4015230	10	LOC_Os02g07700
Deletion	Chr2	8034001	8148000	113999	16
Deletion	Chr9	8847438	8847444	6
Deletion	Chr2	9114994	9114996	2
Deletion	Chr7	10082001	10091000	8999	LOC_Os07g17160
Deletion	Chr7	10900784	10900793	9	LOC_Os07g18410
Deletion	Chr2	11613500	11613501	1
Deletion	Chr11	12087648	12087651	3
Deletion	Chr8	12094810	12094819	9
Deletion	Chr12	12534001	12857000	322999	53
Deletion	Chr3	12821911	12821916	5
Deletion	Chr12	12901001	13051000	149999	18
Deletion	Chr12	13054001	13105000	50999	10
Deletion	Chr12	13661484	13661485	1
Deletion	Chr2	14155001	14236000	80999	12
Deletion	Chr1	14334691	14334700	9
Deletion	Chr2	16321392	16321395	3	LOC_Os02g27560
Deletion	Chr9	18606356	18606364	8
Deletion	Chr1	19697210	19697219	9
Deletion	Chr1	19767001	19793000	25999	4
Deletion	Chr1	19800001	19817000	16999	3
Deletion	Chr5	22186739	22186746	7
Deletion	Chr12	24011544	24011548	4
Deletion	Chr1	28601773	28601777	4
Deletion	Chr3	29954923	29954925	2
Deletion	Chr3	35499984	35499991	7	LOC_Os03g62730

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	10199189	10199189	1
Insertion	Chr10	5985524	5985524	1
Insertion	Chr11	4743608	4743612	5
Insertion	Chr2	14476615	14476615	1
Insertion	Chr4	14979680	14979681	2
Insertion	Chr7	20457901	20457904	4
Insertion	Chr7	22054665	22054666	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	6702839	7100505	2
Inversion	Chr1	6702869	6805194	LOC_Os01g12260
Inversion	Chr12	12853925	13101827	2
Inversion	Chr12	12900681	13267469	LOC_Os12g23450
Inversion	Chr11	22488848	22490278	LOC_Os11g37910

Translocations: 17

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1224682	Chr4	27248223
Translocation	Chr9	5002830	Chr3	2456147
Translocation	Chr10	5039498	Chr8	16573989	LOC_Os08g27120
Translocation	Chr7	5492724	Chr3	33599334	2
Translocation	Chr8	5771681	Chr6	8004069	2
Translocation	Chr8	7125835	Chr5	8822401	2
Translocation	Chr8	8734095	Chr2	23342582	2
Translocation	Chr12	13101813	Chr6	7934013	2
Translocation	Chr8	13598939	Chr3	16448936
Translocation	Chr8	13598943	Chr3	16448819
Translocation	Chr9	14647029	Chr6	28280471	LOC_Os06g46580
Translocation	Chr8	14932717	Chr5	20403560	LOC_Os05g34440
Translocation	Chr7	16998626	Chr4	22551334	LOC_Os04g37920
Translocation	Chr8	20533835	Chr4	7877662	LOC_Os08g33050
Translocation	Chr9	20826319	Chr3	17136842
Translocation	Chr6	23516344	Chr5	5212207	LOC_Os05g09330
Translocation	Chr4	25990483	Chr2	26794030	LOC_Os04g43880

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