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| Mutant Information |
|---|
| Mutant Name | FN3791-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3791-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6696469 | T-C | Homo | ||
| SBS | Chr10 | 11495001 | G-A | HET | ||
| SBS | Chr10 | 347102 | C-T | Homo | ||
| SBS | Chr11 | 13077350 | G-A | HET | ||
| SBS | Chr11 | 19551328 | C-T | HET | ||
| SBS | Chr11 | 27309650 | G-A | Homo | ||
| SBS | Chr12 | 11379256 | C-T | HET | ||
| SBS | Chr12 | 21359342 | T-C | HET | ||
| SBS | Chr12 | 2746203 | C-T | Homo | ||
| SBS | Chr12 | 7368652 | A-G | HET | ||
| SBS | Chr2 | 13210662 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g22180 |
| SBS | Chr2 | 6944 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g01010 |
| SBS | Chr3 | 16739647 | G-A | HET | ||
| SBS | Chr3 | 17800235 | C-T | HET | ||
| SBS | Chr4 | 27460645 | T-G | HET | ||
| SBS | Chr5 | 16014898 | G-T | Homo | ||
| SBS | Chr5 | 16119810 | A-T | Homo | ||
| SBS | Chr5 | 16690163 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g28500 |
| SBS | Chr5 | 3486124 | C-T | HET | ||
| SBS | Chr5 | 8654875 | C-T | Homo | ||
| SBS | Chr6 | 6451638 | G-A | HET | ||
| SBS | Chr6 | 7368837 | T-A | HET | ||
| SBS | Chr6 | 7368838 | G-A | HET | ||
| SBS | Chr7 | 28229380 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os07g47230 |
| SBS | Chr8 | 20775497 | A-T | Homo | ||
| SBS | Chr8 | 328151 | A-G | Homo | ||
| SBS | Chr9 | 5472102 | G-C | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 72516 | 72517 | 1 | |
| Deletion | Chr4 | 1851216 | 1851221 | 5 | |
| Deletion | Chr4 | 2110510 | 2110511 | 1 | |
| Deletion | Chr3 | 7553402 | 7553404 | 2 | LOC_Os03g13920 |
| Deletion | Chr1 | 8840816 | 8840817 | 1 | |
| Deletion | Chr3 | 13282472 | 13282478 | 6 | |
| Deletion | Chr7 | 17222131 | 17222132 | 1 | |
| Deletion | Chr7 | 19108296 | 19108297 | 1 | |
| Deletion | Chr1 | 19979364 | 19979377 | 13 | LOC_Os01g36100 |
| Deletion | Chr8 | 20622427 | 20622429 | 2 | LOC_Os08g33154 |
| Deletion | Chr11 | 22365435 | 22365443 | 8 |
Insertions: 5
Inversions: 13
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 1262202 | 1262650 | LOC_Os07g03210 |
| Inversion | Chr6 | 2164528 | 2164748 | LOC_Os06g04920 |
| Inversion | Chr1 | 3529637 | 3625852 | |
| Inversion | Chr9 | 4212706 | 4489943 | |
| Inversion | Chr9 | 4212712 | 4489949 | |
| Inversion | Chr3 | 12823334 | 12823619 | LOC_Os03g22400 |
| Inversion | Chr11 | 16492626 | 16492961 | |
| Inversion | Chr6 | 17117204 | 18104192 | LOC_Os06g31160 |
| Inversion | Chr6 | 17117232 | 18104189 | LOC_Os06g31160 |
| Inversion | Chr6 | 23949420 | 23949796 | |
| Inversion | Chr3 | 25280356 | 25280654 | LOC_Os03g44830 |
| Inversion | Chr3 | 32083578 | 32083960 | LOC_Os03g56270 |
| Inversion | Chr2 | 34967406 | 34967649 | LOC_Os02g57110 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 9694952 | Chr3 | 16766712 | |
| Translocation | Chr10 | 13993045 | Chr9 | 20287880 | |
| Translocation | Chr8 | 16783131 | Chr5 | 13970147 | LOC_Os05g24190 |
| Translocation | Chr8 | 17769075 | Chr2 | 13477750 | 2 |
| Translocation | Chr12 | 25370427 | Chr8 | 15270537 | |
| Translocation | Chr11 | 28034850 | Chr10 | 1923791 | LOC_Os10g04140 |
| Translocation | Chr3 | 30505766 | Chr2 | 14850576 | 2 |
| Translocation | Chr3 | 30505779 | Chr2 | 14849636 | 2 |