Search Results
| Mutant Information |
|---|
| Mutant Name | FN3793-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3793-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10139349 | C-A | Homo | ||
| SBS | Chr1 | 32938916 | A-G | HET | ||
| SBS | Chr2 | 12524590 | T-C | HET | ||
| SBS | Chr2 | 17234292 | G-A | HET | ||
| SBS | Chr2 | 19473003 | A-C | HET | ||
| SBS | Chr3 | 8809073 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g15970 |
| SBS | Chr3 | 28854919 | T-C | Homo | ||
| SBS | Chr3 | 35143196 | C-A | HET | ||
| SBS | Chr3 | 35289363 | C-T | HET | ||
| SBS | Chr3 | 35501799 | C-T | HET | ||
| SBS | Chr5 | 841699 | G-A | HET | ||
| SBS | Chr5 | 15191665 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g26120 |
| SBS | Chr6 | 7780802 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g13970 |
| SBS | Chr6 | 8720136 | T-A | Homo | ||
| SBS | Chr6 | 30495921 | A-C | Homo | ||
| SBS | Chr7 | 8419827 | G-C | HET | ||
| SBS | Chr9 | 6935241 | A-G | HET | ||
| SBS | Chr9 | 8260234 | G-T | HET | ||
| SBS | Chr11 | 12683054 | C-T | HET | ||
| SBS | Chr12 | 359576 | A-T | HET | ||
| SBS | Chr12 | 3832439 | G-T | HET | ||
| SBS | Chr12 | 16769430 | A-G | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 4347761 | 4347764 | 3 | |
| Deletion | Chr1 | 5086795 | 5086796 | 1 | |
| Deletion | Chr8 | 7645939 | 7645965 | 26 | LOC_Os08g12880 |
| Deletion | Chr11 | 8574248 | 8574250 | 2 | |
| Deletion | Chr6 | 9269002 | 9269006 | 4 | |
| Deletion | Chr6 | 16347750 | 16347771 | 21 | |
| Deletion | Chr11 | 21473805 | 21473809 | 4 | |
| Deletion | Chr7 | 21969214 | 21969216 | 2 | |
| Deletion | Chr11 | 23033534 | 23033536 | 2 | |
| Deletion | Chr6 | 24136377 | 24136385 | 8 | |
| Deletion | Chr12 | 26059144 | 26059150 | 6 | |
| Deletion | Chr3 | 31082001 | 31098000 | 15999 | 3 |
| Deletion | Chr3 | 31318447 | 31318448 | 1 | |
| Deletion | Chr3 | 31491001 | 31540000 | 48999 | 9 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 7016991 | 7016991 | 1 | |
| Insertion | Chr7 | 4124573 | 4124574 | 2 | |
| Insertion | Chr10 | 13310325 | 13310325 | 1 | |
| Insertion | Chr11 | 1897182 | 1897183 | 2 | |
| Insertion | Chr1 | 14535519 | 14535519 | 1 | |
| Insertion | Chr4 | 15065348 | 15065348 | 1 | |
| Insertion | Chr4 | 15246189 | 15246189 | 1 | |
| Insertion | Chr5 | 15980109 | 15980109 | 1 | LOC_Os05g27480 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 19116012 | 19625873 | |
| Inversion | Chr8 | 19116017 | 19625877 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 7538272 | Chr1 | 8557361 | |
| Translocation | Chr9 | 7890210 | Chr3 | 8813121 | |
| Translocation | Chr9 | 7890215 | Chr3 | 8806131 | LOC_Os03g15960 |
| Translocation | Chr10 | 13367285 | Chr1 | 25286977 | |
| Translocation | Chr12 | 18161567 | Chr3 | 13456995 | 2 |
| Translocation | Chr4 | 24962093 | Chr1 | 35969182 | LOC_Os04g42160 |