Search Results
| Mutant Information |
|---|
| Mutant Name | FN3794-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3794-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14265342 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g25270 |
| SBS | Chr1 | 16483558 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g29409 |
| SBS | Chr2 | 12617681 | A-G | HET | ||
| SBS | Chr3 | 11624575 | T-A | Homo | ||
| SBS | Chr4 | 4579776 | G-A | HET | ||
| SBS | Chr4 | 12193348 | A-C | HET | ||
| SBS | Chr4 | 12243782 | C-T | HET | ||
| SBS | Chr5 | 15862383 | C-T | Homo | ||
| SBS | Chr5 | 28562612 | T-A | Homo | ||
| SBS | Chr6 | 1107683 | G-A | Homo | ||
| SBS | Chr6 | 11277418 | A-C | HET | ||
| SBS | Chr6 | 17364138 | G-A | HET | ||
| SBS | Chr6 | 17459352 | A-G | HET | ||
| SBS | Chr7 | 8871049 | T-C | Homo | ||
| SBS | Chr7 | 9547011 | A-T | Homo | ||
| SBS | Chr7 | 17921495 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g30310 |
| SBS | Chr8 | 6685630 | T-C | Homo | ||
| SBS | Chr9 | 8329815 | C-T | HET | ||
| SBS | Chr10 | 7320499 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g13530 |
| SBS | Chr10 | 12173287 | T-G | HET | ||
| SBS | Chr10 | 16940611 | A-G | HET | ||
| SBS | Chr11 | 21585216 | C-T | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 620049 | 620060 | 11 | |
| Deletion | Chr5 | 3807001 | 3856000 | 48999 | 7 |
| Deletion | Chr11 | 12317372 | 12317373 | 1 | |
| Deletion | Chr7 | 13060044 | 13060061 | 17 | |
| Deletion | Chr1 | 16572502 | 16572506 | 4 | LOC_Os01g29570 |
| Deletion | Chr4 | 18084213 | 18084215 | 2 | |
| Deletion | Chr1 | 22392384 | 22392396 | 12 | LOC_Os01g39700 |
| Deletion | Chr10 | 22584690 | 22584695 | 5 | |
| Deletion | Chr3 | 31108651 | 31108652 | 1 | |
| Deletion | Chr3 | 34435729 | 34435736 | 7 | LOC_Os03g60600 |
| Deletion | Chr2 | 35366896 | 35366897 | 1 | LOC_Os02g57750 |
Insertions: 7
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 15715059 | 15715410 | LOC_Os11g27329 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 250305 | Chr6 | 12706716 | LOC_Os11g01400 |
| Translocation | Chr11 | 250316 | Chr6 | 12714211 | LOC_Os11g01400 |
| Translocation | Chr8 | 15003124 | Chr5 | 4928633 | LOC_Os08g24770 |
| Translocation | Chr11 | 21130015 | Chr1 | 6066949 | |
| Translocation | Chr12 | 21340263 | Chr1 | 32265529 | |
| Translocation | Chr6 | 22827900 | Chr5 | 15579833 |