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| Mutant Information |
|---|
| Mutant Name | FN3795-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3795-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29824040 | G-A | HET | ||
| SBS | Chr1 | 30510466 | C-A | HET | ||
| SBS | Chr1 | 31930831 | G-A | HET | ||
| SBS | Chr1 | 33763398 | G-A | HET | ||
| SBS | Chr10 | 6328835 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os10g11430 |
| SBS | Chr11 | 21970907 | T-A | HET | ||
| SBS | Chr12 | 11083217 | G-T | Homo | ||
| SBS | Chr12 | 15966278 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g27210 |
| SBS | Chr2 | 13473625 | G-C | HET | ||
| SBS | Chr2 | 14380662 | T-G | HET | ||
| SBS | Chr2 | 2417777 | G-A | HET | ||
| SBS | Chr2 | 32030635 | C-T | HET | ||
| SBS | Chr2 | 33049280 | A-T | HET | ||
| SBS | Chr2 | 33049281 | T-C | HET | ||
| SBS | Chr2 | 609611 | A-G | HET | ||
| SBS | Chr2 | 6715070 | C-A | HET | ||
| SBS | Chr3 | 15542964 | C-T | HET | ||
| SBS | Chr3 | 20866954 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g37630 |
| SBS | Chr3 | 20872668 | A-T | Homo | ||
| SBS | Chr3 | 2893819 | G-A | Homo | ||
| SBS | Chr3 | 9241964 | C-T | HET | ||
| SBS | Chr4 | 16721888 | A-T | Homo | ||
| SBS | Chr4 | 18948956 | C-T | Homo | ||
| SBS | Chr5 | 1075263 | G-A | HET | ||
| SBS | Chr5 | 25166523 | T-A | HET | ||
| SBS | Chr5 | 25462042 | G-T | HET | ||
| SBS | Chr5 | 28030717 | G-A | HET | ||
| SBS | Chr5 | 28163045 | C-T | HET | ||
| SBS | Chr5 | 79878 | T-C | HET | ||
| SBS | Chr6 | 10550258 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g18120 |
| SBS | Chr6 | 8788729 | C-G | Homo | ||
| SBS | Chr6 | 9218962 | T-C | Homo | ||
| SBS | Chr7 | 13721682 | T-C | HET | ||
| SBS | Chr7 | 6183238 | C-G | HET | ||
| SBS | Chr7 | 9553575 | T-G | HET | ||
| SBS | Chr8 | 13500655 | T-C | Homo | ||
| SBS | Chr8 | 20249890 | C-A | Homo | ||
| SBS | Chr8 | 26903814 | T-C | HET | ||
| SBS | Chr8 | 9523135 | A-G | HET | ||
| SBS | Chr9 | 5690770 | G-A | HET | ||
| SBS | Chr9 | 5690772 | G-A | HET |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 2703059 | 2703063 | 4 | LOC_Os08g05180 |
| Deletion | Chr7 | 8599813 | 8599815 | 2 | |
| Deletion | Chr1 | 14660617 | 14660627 | 10 | |
| Deletion | Chr11 | 17340079 | 17340081 | 2 | |
| Deletion | Chr1 | 23700127 | 23700137 | 10 | |
| Deletion | Chr3 | 26061955 | 26061956 | 1 | LOC_Os03g46080 |
Insertions: 6
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 6340206 | 6341942 | |
| Inversion | Chr7 | 6340211 | 6341944 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 11406745 | Chr11 | 4204599 |