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| Mutant Information |
|---|
| Mutant Name | FN3796-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3796-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21569274 | G-T | HET | ||
| SBS | Chr1 | 24420380 | C-T | HET | ||
| SBS | Chr1 | 24550582 | C-A | HET | ||
| SBS | Chr10 | 5423284 | G-A | HET | ||
| SBS | Chr11 | 18837111 | T-C | Homo | ||
| SBS | Chr11 | 20341782 | A-T | HET | ||
| SBS | Chr11 | 21432791 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g36370 |
| SBS | Chr11 | 8906368 | T-A | Homo | ||
| SBS | Chr11 | 8906369 | C-G | Homo | ||
| SBS | Chr11 | 8906371 | G-A | Homo | ||
| SBS | Chr11 | 9008057 | T-C | Homo | ||
| SBS | Chr12 | 13485218 | G-A | HET | ||
| SBS | Chr12 | 19331472 | A-C | Homo | ||
| SBS | Chr12 | 19759394 | C-A | Homo | ||
| SBS | Chr12 | 19759395 | C-T | Homo | ||
| SBS | Chr12 | 2161297 | A-T | HET | ||
| SBS | Chr2 | 30659157 | C-T | Homo | ||
| SBS | Chr2 | 5927802 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g11060 |
| SBS | Chr3 | 10030782 | G-A | Homo | ||
| SBS | Chr3 | 30470840 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g53130 |
| SBS | Chr4 | 20577443 | A-T | Homo | ||
| SBS | Chr4 | 25648511 | T-A | Homo | ||
| SBS | Chr6 | 14860784 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g25370 |
| SBS | Chr7 | 20062360 | T-C | HET | ||
| SBS | Chr7 | 20062361 | C-T | HET | ||
| SBS | Chr7 | 20062362 | C-A | HET | ||
| SBS | Chr7 | 20188905 | T-G | HET | ||
| SBS | Chr7 | 7078639 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g12410 |
| SBS | Chr7 | 7078647 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g12410 |
| SBS | Chr7 | 7078648 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g12410 |
| SBS | Chr8 | 17576846 | T-G | Homo | ||
| SBS | Chr8 | 27033628 | T-C | Homo | ||
| SBS | Chr8 | 9720949 | G-A | HET | ||
| SBS | Chr9 | 5622750 | G-T | Homo | ||
| SBS | Chr9 | 9431014 | G-A | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 912001 | 952000 | 39999 | 8 |
| Deletion | Chr2 | 3296883 | 3296893 | 10 | |
| Deletion | Chr6 | 11282069 | 11282070 | 1 | |
| Deletion | Chr6 | 14849618 | 14849628 | 10 | |
| Deletion | Chr6 | 18011257 | 18011258 | 1 | |
| Deletion | Chr5 | 19767092 | 19767094 | 2 | |
| Deletion | Chr9 | 22854001 | 22922000 | 67999 | 12 |
| Deletion | Chr5 | 23699713 | 23699730 | 17 | LOC_Os05g40330 |
| Deletion | Chr6 | 29729161 | 29729162 | 1 | LOC_Os06g49050 |
| Deletion | Chr3 | 33957737 | 33957743 | 6 | |
| Deletion | Chr1 | 40811573 | 40811575 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 7670349 | 7670349 | 1 | |
| Insertion | Chr11 | 11998526 | 11998530 | 5 | |
| Insertion | Chr8 | 25824153 | 25824154 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 5283610 | 5323730 | |
| Inversion | Chr5 | 5283611 | 5323739 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5063647 | Chr5 | 15325581 | |
| Translocation | Chr8 | 7455821 | Chr2 | 16612646 | |
| Translocation | Chr5 | 9870525 | Chr4 | 15936509 | |
| Translocation | Chr11 | 10564549 | Chr2 | 9965716 | |
| Translocation | Chr4 | 25757025 | Chr3 | 11224776 | LOC_Os03g19950 |
| Translocation | Chr3 | 31652160 | Chr1 | 22965030 | |
| Translocation | Chr4 | 32065675 | Chr3 | 35082623 | LOC_Os04g53810 |