Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3798-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3798-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12934698 | G-A | HET | ||
| SBS | Chr1 | 39308603 | T-A | HET | ||
| SBS | Chr10 | 669243 | G-A | HET | ||
| SBS | Chr11 | 17860487 | T-C | HET | ||
| SBS | Chr11 | 22437233 | C-T | HET | ||
| SBS | Chr11 | 2413894 | A-G | HET | ||
| SBS | Chr12 | 18191249 | C-G | HET | ||
| SBS | Chr12 | 21661386 | A-G | HET | ||
| SBS | Chr12 | 4275280 | A-G | HET | ||
| SBS | Chr2 | 11795839 | G-A | HET | STOP_GAINED | LOC_Os02g20030 |
| SBS | Chr2 | 14273 | C-A | HET | ||
| SBS | Chr2 | 2142281 | G-A | HET | ||
| SBS | Chr2 | 31703353 | G-C | Homo | ||
| SBS | Chr2 | 35021630 | G-A | Homo | ||
| SBS | Chr3 | 18327777 | G-A | HET | ||
| SBS | Chr3 | 26308354 | C-T | Homo | ||
| SBS | Chr4 | 26091360 | C-T | HET | ||
| SBS | Chr4 | 29020269 | G-T | HET | ||
| SBS | Chr4 | 33227991 | G-A | HET | ||
| SBS | Chr4 | 7385158 | T-C | HET | ||
| SBS | Chr5 | 14210622 | A-G | Homo | ||
| SBS | Chr5 | 22667365 | G-A | HET | ||
| SBS | Chr5 | 28882604 | C-T | HET | ||
| SBS | Chr5 | 4149112 | A-G | HET | ||
| SBS | Chr5 | 9211264 | C-T | HET | ||
| SBS | Chr6 | 17716610 | C-A | Homo | ||
| SBS | Chr6 | 30044535 | C-T | HET | ||
| SBS | Chr7 | 10881142 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g18360 |
| SBS | Chr7 | 22212973 | G-A | HET | ||
| SBS | Chr7 | 25903575 | C-A | HET | ||
| SBS | Chr7 | 9832452 | A-T | Homo | ||
| SBS | Chr8 | 10930226 | T-A | HET | ||
| SBS | Chr8 | 20785807 | G-T | HET | ||
| SBS | Chr8 | 5889637 | C-T | HET | ||
| SBS | Chr9 | 16094428 | T-C | Homo | ||
| SBS | Chr9 | 21534651 | G-A | Homo | ||
| SBS | Chr9 | 6551907 | G-T | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1977223 | 1977226 | 3 | |
| Deletion | Chr4 | 8137256 | 8137260 | 4 | LOC_Os04g14540 |
| Deletion | Chr1 | 8857518 | 8857520 | 2 | |
| Deletion | Chr5 | 9095817 | 9095834 | 17 | |
| Deletion | Chr9 | 9710633 | 9710642 | 9 | LOC_Os09g15890 |
| Deletion | Chr2 | 17433108 | 17433114 | 6 | |
| Deletion | Chr6 | 23455608 | 23455742 | 134 | |
| Deletion | Chr11 | 28719115 | 28719121 | 6 | |
| Deletion | Chr2 | 32424341 | 32424351 | 10 | |
| Deletion | Chr1 | 36135249 | 36135258 | 9 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 12728030 | 12728031 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 7025865 | 7089025 | LOC_Os04g12690 |
| Inversion | Chr4 | 7080023 | 7089026 | |
| Inversion | Chr8 | 16811501 | 17232080 | LOC_Os08g28240 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 338453 | Chr5 | 11351524 | 2 |
| Translocation | Chr9 | 9301835 | Chr4 | 33229351 | LOC_Os04g55810 |
| Translocation | Chr3 | 12146453 | Chr1 | 1044051 | LOC_Os03g21260 |
| Translocation | Chr8 | 21265521 | Chr3 | 31211941 | 2 |
| Translocation | Chr8 | 21265836 | Chr3 | 32255640 |