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Mutant Information |
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Mutant Name | FN3800-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3800-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 50
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 3476666 | C-T | HET | ||
SBS | Chr1 | 5309858 | G-A | HET | ||
SBS | Chr1 | 13205852 | G-A | Homo | ||
SBS | Chr1 | 26730225 | G-A | HET | ||
SBS | Chr2 | 14230343 | G-T | HET | ||
SBS | Chr2 | 14524171 | C-T | HET | ||
SBS | Chr2 | 20911848 | C-T | HET | ||
SBS | Chr2 | 27968814 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g45890 |
SBS | Chr3 | 12653451 | G-A | HET | ||
SBS | Chr3 | 27202613 | C-T | HET | ||
SBS | Chr4 | 6031081 | G-A | HET | ||
SBS | Chr4 | 8924358 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g16420 |
SBS | Chr4 | 9483071 | C-T | HET | ||
SBS | Chr4 | 13782048 | C-G | Homo | ||
SBS | Chr4 | 16253722 | C-T | HET | ||
SBS | Chr4 | 16508069 | G-A | Homo | ||
SBS | Chr4 | 24630160 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g41520 |
SBS | Chr4 | 30750739 | G-A | HET | ||
SBS | Chr4 | 32019333 | G-A | HET | ||
SBS | Chr4 | 32019336 | A-T | HET | ||
SBS | Chr4 | 34669257 | C-T | HET | ||
SBS | Chr5 | 5678636 | T-C | HET | ||
SBS | Chr5 | 12830223 | T-C | Homo | ||
SBS | Chr5 | 19037493 | G-A | Homo | ||
SBS | Chr6 | 17180025 | T-A | Homo | ||
SBS | Chr6 | 17200694 | A-G | Homo | ||
SBS | Chr7 | 3247346 | G-A | HET | ||
SBS | Chr7 | 18124638 | A-T | HET | ||
SBS | Chr7 | 19176329 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g32260 |
SBS | Chr8 | 4886605 | G-T | HET | ||
SBS | Chr8 | 9545895 | A-G | HET | ||
SBS | Chr8 | 9549557 | T-C | HET | ||
SBS | Chr8 | 12771501 | C-T | HET | ||
SBS | Chr8 | 27734603 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g44050 |
SBS | Chr9 | 1072587 | C-T | HET | ||
SBS | Chr9 | 4982811 | C-T | HET | ||
SBS | Chr9 | 14260258 | C-T | HET | ||
SBS | Chr9 | 14588709 | A-T | Homo | ||
SBS | Chr9 | 14588710 | G-T | Homo | ||
SBS | Chr9 | 20842492 | T-A | HET | ||
SBS | Chr10 | 6118707 | A-G | HET | ||
SBS | Chr10 | 9077998 | G-A | HET | ||
SBS | Chr10 | 16077277 | G-A | HET | ||
SBS | Chr10 | 23000162 | A-G | HET | ||
SBS | Chr11 | 5596974 | C-A | HET | ||
SBS | Chr11 | 10255085 | T-G | HET | ||
SBS | Chr11 | 18092397 | A-G | HET | ||
SBS | Chr11 | 18092398 | G-A | HET | ||
SBS | Chr11 | 26143661 | T-A | HET | ||
SBS | Chr12 | 18057555 | G-A | HET |
Deletions: 23
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr7 | 420607 | 420608 | 1 | |
Deletion | Chr8 | 624214 | 624223 | 9 | |
Deletion | Chr11 | 2165128 | 2165135 | 7 | |
Deletion | Chr4 | 3036243 | 3036247 | 4 | |
Deletion | Chr4 | 3074877 | 3074878 | 1 | |
Deletion | Chr3 | 4197232 | 4197233 | 1 | LOC_Os03g08240 |
Deletion | Chr12 | 6685564 | 6685566 | 2 | LOC_Os12g12180 |
Deletion | Chr8 | 7542327 | 7542330 | 3 | |
Deletion | Chr1 | 7882612 | 7882613 | 1 | |
Deletion | Chr7 | 8311061 | 8311063 | 2 | LOC_Os07g14570 |
Deletion | Chr5 | 8943291 | 8943295 | 4 | |
Deletion | Chr9 | 9216618 | 9216632 | 14 | |
Deletion | Chr7 | 10114659 | 10114674 | 15 | |
Deletion | Chr11 | 14937244 | 14937246 | 2 | |
Deletion | Chr2 | 15255224 | 15255225 | 1 | |
Deletion | Chr7 | 15489973 | 15489974 | 1 | LOC_Os07g26800 |
Deletion | Chr6 | 16775155 | 16775156 | 1 | LOC_Os06g29350 |
Deletion | Chr11 | 18092963 | 18092964 | 1 | |
Deletion | Chr10 | 21639761 | 21639763 | 2 | |
Deletion | Chr12 | 24221845 | 24221846 | 1 | |
Deletion | Chr5 | 25411050 | 25411051 | 1 | |
Deletion | Chr5 | 29004529 | 29004533 | 4 | LOC_Os05g50600 |
Deletion | Chr4 | 30106027 | 30106031 | 4 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr3 | 15780243 | 15780244 | 2 | |
Insertion | Chr12 | 4240078 | 4240078 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr1 | 3634884 | 3635141 | LOC_Os01g07570 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 8228145 | Chr5 | 8546770 | |
Translocation | Chr11 | 16683666 | Chr3 | 25613097 |