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| Mutant Information |
|---|
| Mutant Name | FN3801-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3801-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12012931 | T-G | HET | ||
| SBS | Chr1 | 20929589 | G-T | HET | ||
| SBS | Chr1 | 38078893 | G-T | HET | ||
| SBS | Chr10 | 9037232 | G-A | HET | ||
| SBS | Chr11 | 13046349 | G-A | Homo | ||
| SBS | Chr11 | 18206913 | T-G | Homo | ||
| SBS | Chr12 | 17815814 | T-C | HET | ||
| SBS | Chr12 | 18839679 | G-A | HET | ||
| SBS | Chr2 | 7919790 | T-A | HET | ||
| SBS | Chr4 | 11280622 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g20220 |
| SBS | Chr4 | 30238 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g01030 |
| SBS | Chr4 | 3290068 | G-A | HET | ||
| SBS | Chr4 | 35332249 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g59430 |
| SBS | Chr4 | 4966773 | T-C | HET | ||
| SBS | Chr5 | 21401903 | C-T | HET | ||
| SBS | Chr5 | 28074747 | G-A | HET | ||
| SBS | Chr5 | 5379369 | C-T | Homo | ||
| SBS | Chr6 | 29345455 | A-G | HET | ||
| SBS | Chr7 | 23147695 | T-A | Homo | STOP_GAINED | LOC_Os07g38530 |
| SBS | Chr8 | 1672114 | T-C | HET | ||
| SBS | Chr9 | 14527410 | G-A | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1128116 | 1128117 | 1 | |
| Deletion | Chr4 | 6107269 | 6107270 | 1 | |
| Deletion | Chr5 | 6169033 | 6169035 | 2 | |
| Deletion | Chr5 | 8158638 | 8158640 | 2 | |
| Deletion | Chr6 | 8235734 | 8235739 | 5 | |
| Deletion | Chr6 | 9155877 | 9155885 | 8 | LOC_Os06g16080 |
| Deletion | Chr5 | 11657134 | 11657140 | 6 | |
| Deletion | Chr3 | 16163600 | 16163612 | 12 | |
| Deletion | Chr12 | 20320001 | 20428000 | 107999 | 20 |
| Deletion | Chr11 | 23686711 | 23686726 | 15 | |
| Deletion | Chr1 | 24779064 | 24779075 | 11 | LOC_Os01g43340 |
| Deletion | Chr1 | 26987284 | 26987286 | 2 | |
| Deletion | Chr6 | 30037150 | 30037153 | 3 | LOC_Os06g49640 |
| Deletion | Chr1 | 34143336 | 34143339 | 3 |
No Insertion
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 12635405 | 12838070 | |
| Inversion | Chr1 | 20101027 | 20111722 | 2 |
| Inversion | Chr1 | 20101031 | 20111731 | 2 |
| Inversion | Chr7 | 21602753 | 21611962 | |
| Inversion | Chr7 | 21602758 | 21611962 | |
| Inversion | Chr4 | 25362706 | 26240611 | LOC_Os04g44300 |
| Inversion | Chr4 | 25362727 | 26240623 | LOC_Os04g44300 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5979870 | Chr3 | 35071692 | |
| Translocation | Chr11 | 14431665 | Chr4 | 13241674 | |
| Translocation | Chr11 | 23740972 | Chr7 | 24849957 | LOC_Os07g41470 |
| Translocation | Chr6 | 31247529 | Chr2 | 7 |