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Mutant Information |
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Mutant Name | FN3802-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3802-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 27
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 13485815 | G-T | HET | ||
SBS | Chr1 | 43173784 | G-T | Homo | ||
SBS | Chr10 | 3353926 | G-A | HET | ||
SBS | Chr10 | 663157 | C-A | HET | ||
SBS | Chr11 | 8352879 | A-G | Homo | ||
SBS | Chr12 | 25381311 | C-T | HET | ||
SBS | Chr2 | 30342182 | G-A | HET | ||
SBS | Chr2 | 30682612 | T-A | HET | ||
SBS | Chr3 | 12347957 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g21630 |
SBS | Chr3 | 13505822 | A-T | HET | ||
SBS | Chr3 | 29692027 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g51770 |
SBS | Chr3 | 29692028 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g51770 |
SBS | Chr4 | 13346783 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g23360 |
SBS | Chr4 | 23518009 | T-A | HET | ||
SBS | Chr4 | 27058775 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g45730 |
SBS | Chr4 | 27058779 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g45730 |
SBS | Chr4 | 27058782 | G-A | HET | ||
SBS | Chr4 | 27968901 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g47100 |
SBS | Chr5 | 15394575 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g26470 |
SBS | Chr6 | 5913473 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g11280 |
SBS | Chr7 | 18129280 | C-A | Homo | ||
SBS | Chr7 | 18848204 | A-T | HET | ||
SBS | Chr8 | 12452971 | T-A | HET | ||
SBS | Chr8 | 13588841 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g22570 |
SBS | Chr8 | 5951114 | C-A | HET | ||
SBS | Chr9 | 11551661 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g19300 |
SBS | Chr9 | 17577643 | C-T | HET |
Deletions: 24
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 877183 | 877186 | 3 | |
Deletion | Chr12 | 4440200 | 4440212 | 12 | |
Deletion | Chr8 | 5145385 | 5145386 | 1 | |
Deletion | Chr8 | 5864849 | 5864855 | 6 | |
Deletion | Chr8 | 5872382 | 5872383 | 1 | |
Deletion | Chr10 | 7527460 | 7527467 | 7 | |
Deletion | Chr3 | 12312583 | 12312584 | 1 | |
Deletion | Chr4 | 12662654 | 12662655 | 1 | |
Deletion | Chr4 | 12929001 | 12949000 | 19999 | 3 |
Deletion | Chr4 | 14063600 | 14063605 | 5 | |
Deletion | Chr7 | 14629001 | 14666000 | 36999 | 4 |
Deletion | Chr4 | 14668034 | 14668037 | 3 | |
Deletion | Chr7 | 15152966 | 15152974 | 8 | |
Deletion | Chr7 | 15621063 | 15621073 | 10 | |
Deletion | Chr2 | 16516129 | 16516130 | 1 | |
Deletion | Chr9 | 16643358 | 16643379 | 21 | |
Deletion | Chr11 | 20055491 | 20055497 | 6 | |
Deletion | Chr9 | 20743643 | 20743654 | 11 | LOC_Os09g36010 |
Deletion | Chr8 | 24318030 | 24318035 | 5 | |
Deletion | Chr6 | 27489527 | 27489530 | 3 | |
Deletion | Chr2 | 28809135 | 28809142 | 7 | |
Deletion | Chr6 | 29396167 | 29396171 | 4 | |
Deletion | Chr3 | 29587141 | 29587142 | 1 | LOC_Os03g51670 |
Deletion | Chr1 | 33658801 | 33658824 | 23 |
Insertions: 6
Inversions: 4
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 7942120 | 7979464 | |
Inversion | Chr5 | 7942121 | 7979465 | |
Inversion | Chr7 | 14630825 | 14668570 | |
Inversion | Chr7 | 14668614 | 15167420 | LOC_Os07g26390 |
Translocations: 8
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr8 | 161135 | Chr1 | 43066624 | |
Translocation | Chr8 | 407758 | Chr2 | 27810332 | |
Translocation | Chr6 | 2662128 | Chr2 | 10979410 | 3 |
Translocation | Chr6 | 2662743 | Chr2 | 10979410 | 3 |
Translocation | Chr6 | 10800783 | Chr4 | 16768940 | |
Translocation | Chr7 | 11939143 | Chr5 | 12231146 | 2 |
Translocation | Chr11 | 14148597 | Chr1 | 2542711 | LOC_Os01g05380 |
Translocation | Chr8 | 19754201 | Chr1 | 24031476 |