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Mutant Information

Mutant NameFN3802-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3802-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 27
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr113485815G-THET
SBSChr143173784G-THomo
SBSChr103353926G-AHET
SBSChr10663157C-AHET
SBSChr118352879A-GHomo
SBSChr1225381311C-THET
SBSChr230342182G-AHET
SBSChr230682612T-AHET
SBSChr312347957G-AHETNON_SYNONYMOUS_CODINGLOC_Os03g21630
SBSChr313505822A-THET
SBSChr329692027G-THomoNON_SYNONYMOUS_CODINGLOC_Os03g51770
SBSChr329692028G-THomoNON_SYNONYMOUS_CODINGLOC_Os03g51770
SBSChr413346783C-AHomoNON_SYNONYMOUS_CODINGLOC_Os04g23360
SBSChr423518009T-AHET
SBSChr427058775C-THETNON_SYNONYMOUS_CODINGLOC_Os04g45730
SBSChr427058779C-AHETNON_SYNONYMOUS_CODINGLOC_Os04g45730
SBSChr427058782G-AHET
SBSChr427968901G-THETNON_SYNONYMOUS_CODINGLOC_Os04g47100
SBSChr515394575T-AHETNON_SYNONYMOUS_CODINGLOC_Os05g26470
SBSChr65913473C-THomoNON_SYNONYMOUS_CODINGLOC_Os06g11280
SBSChr718129280C-AHomo
SBSChr718848204A-THET
SBSChr812452971T-AHET
SBSChr813588841C-THETNON_SYNONYMOUS_CODINGLOC_Os08g22570
SBSChr85951114C-AHET
SBSChr911551661C-THomoNON_SYNONYMOUS_CODINGLOC_Os09g19300
SBSChr917577643C-THET

Deletions: 24
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr38771838771863
DeletionChr124440200444021212
DeletionChr8514538551453861
DeletionChr8586484958648556
DeletionChr8587238258723831
DeletionChr10752746075274677
DeletionChr312312583123125841
DeletionChr412662654126626551
DeletionChr41292900112949000199993
DeletionChr414063600140636055
DeletionChr71462900114666000369994
DeletionChr414668034146680373
DeletionChr715152966151529748
DeletionChr7156210631562107310
DeletionChr216516129165161301
DeletionChr9166433581664337921
DeletionChr1120055491200554976
DeletionChr9207436432074365411LOC_Os09g36010
DeletionChr824318030243180355
DeletionChr627489527274895303
DeletionChr228809135288091427
DeletionChr629396167293961714
DeletionChr329587141295871421LOC_Os03g51670
DeletionChr1336588013365882423

Insertions: 6
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1113692905136929128
InsertionChr211245859112458624
InsertionChr224759160247591601
InsertionChr36839746839741
InsertionChr615912786159127861
InsertionChr7292395329239564

Inversions: 4
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr579421207979464
InversionChr579421217979465
InversionChr71463082514668570
InversionChr71466861415167420LOC_Os07g26390

Translocations: 8
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr8161135Chr143066624
TranslocationChr8407758Chr227810332
TranslocationChr62662128Chr2109794103
TranslocationChr62662743Chr2109794103
TranslocationChr610800783Chr416768940
TranslocationChr711939143Chr5122311462
TranslocationChr1114148597Chr12542711LOC_Os01g05380
TranslocationChr819754201Chr124031476