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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12512727	C-T	Homo
SBS	Chr1	24958491	G-C	Homo
SBS	Chr2	3481069	T-A	HET
SBS	Chr2	7019489	C-G	HET
SBS	Chr2	7019490	G-A	HET
SBS	Chr3	25817874	T-C	Homo
SBS	Chr3	26339321	T-G	Homo
SBS	Chr4	2423296	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g04999
SBS	Chr4	6313477	T-A	Homo
SBS	Chr4	6527832	G-T	Homo
SBS	Chr4	26894118	G-A	HET
SBS	Chr4	27874561	T-C	HET
SBS	Chr4	27876224	A-T	HET
SBS	Chr4	30919840	G-A	HET
SBS	Chr4	34467952	G-A	HET
SBS	Chr5	14082507	T-C	HET
SBS	Chr5	26526008	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45790
SBS	Chr5	27781934	G-C	HET
SBS	Chr5	29016613	C-T	HET
SBS	Chr6	26014064	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g43290
SBS	Chr7	2755078	T-A	HET
SBS	Chr7	10727347	G-A	HET
SBS	Chr7	13018360	C-T	HET
SBS	Chr7	20209211	A-G	HET
SBS	Chr8	451877	G-A	HET
SBS	Chr8	2241152	C-T	HET
SBS	Chr8	12168146	A-G	Homo
SBS	Chr8	14961615	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g24730
SBS	Chr9	6178471	A-T	HET
SBS	Chr9	6707757	G-T	HET
SBS	Chr9	19894483	G-T	Homo
SBS	Chr10	2179251	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g04580
SBS	Chr11	23636709	C-G	HET
SBS	Chr11	26387192	A-G	HET
SBS	Chr12	22935543	G-A	HET

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	500706	500737	31	LOC_Os12g01850
Deletion	Chr9	2952942	2952954	12
Deletion	Chr7	6434001	6460000	25999	2
Deletion	Chr7	6465001	6546000	80999	13
Deletion	Chr11	7684001	7932000	247999	27
Deletion	Chr7	7864668	7864676	8	LOC_Os07g13700
Deletion	Chr7	10957078	10957079	1
Deletion	Chr12	11021636	11021642	6
Deletion	Chr7	11023789	11023798	9
Deletion	Chr11	12879913	12879914	1
Deletion	Chr1	20181202	20181203	1
Deletion	Chr12	21670289	21670292	3
Deletion	Chr12	22935460	22935461	1
Deletion	Chr4	24883854	24883860	6
Deletion	Chr2	26239410	26239419	9
Deletion	Chr6	26241199	26241200	1
Deletion	Chr12	26421561	26421573	12
Deletion	Chr6	26761685	26761687	2
Deletion	Chr6	27273380	27273397	17
Deletion	Chr1	28435268	28435279	11
Deletion	Chr3	34899076	34899084	8	LOC_Os03g61540
Deletion	Chr1	37637932	37637943	11	LOC_Os01g64830

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	37158883	37158884	2
Insertion	Chr3	7946056	7946057	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6435476	7122107	LOC_Os07g12490
Inversion	Chr7	6887188	7122113	2
Inversion	Chr9	16553295	16553471	LOC_Os09g27220
Inversion	Chr4	27524419	27885127	LOC_Os04g47040
Inversion	Chr4	27812565	27876751	LOC_Os04g46894

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	27248005	Chr3	18277182

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