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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25113948	G-A	HET
SBS	Chr10	3961309	G-A	Homo
SBS	Chr11	13363512	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23210
SBS	Chr11	20932858	G-A	HET
SBS	Chr12	1008483	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g02820
SBS	Chr12	12160495	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g21640
SBS	Chr12	2177510	A-C	Homo
SBS	Chr12	25354639	C-T	HET
SBS	Chr2	19813515	C-A	Homo
SBS	Chr2	2196779	T-C	HET
SBS	Chr3	18228437	C-T	HET
SBS	Chr3	30347338	C-A	HET
SBS	Chr3	6958175	T-C	HET
SBS	Chr4	14083998	G-A	HET
SBS	Chr4	14083999	G-A	HET
SBS	Chr4	15349113	G-A	HET
SBS	Chr4	16855260	G-A	HET
SBS	Chr4	25508151	T-A	HET
SBS	Chr4	27631527	C-T	HET
SBS	Chr4	29770041	C-T	HET
SBS	Chr5	12231457	G-C	HET
SBS	Chr5	15555782	C-A	HET
SBS	Chr6	26422288	A-T	HET
SBS	Chr7	10983089	A-G	HET
SBS	Chr7	11084936	G-A	HET
SBS	Chr7	16610525	G-T	HET
SBS	Chr7	17398352	A-G	HET
SBS	Chr7	18162848	C-T	HET
SBS	Chr7	20477978	C-T	HET
SBS	Chr7	868558	C-A	HET	SPLICE_SITE_DONOR	LOC_Os07g02490
SBS	Chr9	10751594	G-T	HET	STOP_GAINED	LOC_Os09g17580
SBS	Chr9	10751595	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g17580
SBS	Chr9	11994993	G-T	HET
SBS	Chr9	16409803	A-G	HET
SBS	Chr9	16686421	T-A	Homo
SBS	Chr9	16686428	G-C	Homo
SBS	Chr9	21291307	G-C	HET
SBS	Chr9	5763218	T-C	Homo

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	593033	593039	6
Deletion	Chr8	2082041	2082044	3
Deletion	Chr10	3942579	3942601	22
Deletion	Chr10	4898168	4898183	15
Deletion	Chr8	5711752	5711760	8
Deletion	Chr6	6671542	6671543	1
Deletion	Chr11	7964453	7964459	6
Deletion	Chr7	9380475	9380476	1
Deletion	Chr6	9538926	9538928	2
Deletion	Chr1	9690011	9690012	1
Deletion	Chr9	12370696	12370702	6	LOC_Os09g20520
Deletion	Chr7	13701590	13701594	4
Deletion	Chr12	13935849	13935883	34
Deletion	Chr2	15451338	15451339	1
Deletion	Chr9	17312032	17312044	12	LOC_Os09g28450
Deletion	Chr4	17657366	17657368	2
Deletion	Chr8	18316397	18316407	10
Deletion	Chr10	18780490	18780491	1
Deletion	Chr11	18882001	18904000	21999	6
Deletion	Chr5	21089674	21089686	12
Deletion	Chr10	21339001	21388000	48999	8
Deletion	Chr7	23145983	23145984	1
Deletion	Chr11	23570793	23570802	9
Deletion	Chr1	24533954	24533956	2
Deletion	Chr8	25005667	25005674	7
Deletion	Chr11	25016989	25016992	3
Deletion	Chr3	26368688	26368690	2
Deletion	Chr6	26429542	26429561	19
Deletion	Chr7	28287695	28287696	1
Deletion	Chr3	33306916	33306920	4
Deletion	Chr3	33818013	33818015	2	LOC_Os03g59410
Deletion	Chr3	34637309	34637337	28	LOC_Os03g60960

No Insertion

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4400123	Chr6	9640393	LOC_Os06g16710
Translocation	Chr11	19390598	Chr2	23245302	LOC_Os11g32820

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