Search Results
Mutant Information |
---|
Mutant Name | FN3805-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3805-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
---|
Single base substitutions: 14
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 10405502 | T-A | HET | ||
SBS | Chr1 | 25208292 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g43980 |
SBS | Chr1 | 43164076 | T-C | HET | ||
SBS | Chr4 | 18640406 | C-G | Homo | ||
SBS | Chr5 | 29306822 | C-T | HET | ||
SBS | Chr5 | 29480258 | G-A | HET | ||
SBS | Chr6 | 3921873 | T-C | HET | ||
SBS | Chr6 | 16168174 | G-A | HET | ||
SBS | Chr7 | 3667985 | A-G | HET | ||
SBS | Chr7 | 21925142 | C-T | HET | ||
SBS | Chr10 | 7142889 | A-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g12790 |
SBS | Chr11 | 3529050 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g07080 |
SBS | Chr11 | 26480318 | T-A | HET | ||
SBS | Chr12 | 15508000 | A-C | HET |
Deletions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr11 | 5740144 | 5740151 | 7 | LOC_Os11g10500 |
Deletion | Chr10 | 5910590 | 5910598 | 8 | |
Deletion | Chr3 | 21279270 | 21279282 | 12 | |
Deletion | Chr6 | 22433238 | 22433239 | 1 | |
Deletion | Chr1 | 37224333 | 37224334 | 1 | LOC_Os01g64080 |
Insertions: 6
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr7 | 7179441 | 7179442 | 2 | |
Insertion | Chr9 | 3274622 | 3274622 | 1 | |
Insertion | Chr1 | 33577823 | 33577828 | 6 | |
Insertion | Chr5 | 21807624 | 21807624 | 1 | LOC_Os05g37270 |
Insertion | Chr8 | 17969694 | 17970201 | 508 | |
Insertion | Chr12 | 1823813 | 1823820 | 8 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr6 | 17220860 | 17462738 | LOC_Os06g30260 |
Inversion | Chr6 | 17220871 | 17462743 | LOC_Os06g30260 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 730986 | Chr11 | 690906 | |
Translocation | Chr11 | 8196297 | Chr4 | 13912048 | |
Translocation | Chr8 | 10047760 | Chr5 | 17972224 | |
Translocation | Chr10 | 21488357 | Chr4 | 13998989 | LOC_Os10g40140 |
Translocation | Chr12 | 27080746 | Chr6 | 8332724 |