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Mutant Information

Mutant Name	FN3805-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3805-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10405502	T-A	HET
SBS	Chr1	25208292	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g43980
SBS	Chr1	43164076	T-C	HET
SBS	Chr10	7142889	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g12790
SBS	Chr11	26480318	T-A	HET
SBS	Chr11	3529050	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g07080
SBS	Chr12	15508000	A-C	HET
SBS	Chr4	18640406	C-G	Homo
SBS	Chr5	29306822	C-T	HET
SBS	Chr5	29480258	G-A	HET
SBS	Chr6	16168174	G-A	HET
SBS	Chr6	3921873	T-C	HET
SBS	Chr7	21925142	C-T	HET
SBS	Chr7	3667985	A-G	HET

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	5740144	5740151	7	LOC_Os11g10500
Deletion	Chr10	5910590	5910598	8
Deletion	Chr3	21279270	21279282	12
Deletion	Chr6	22433238	22433239	1
Deletion	Chr1	37224333	37224334	1	LOC_Os01g64080

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	33577823	33577828	6
Insertion	Chr12	1823813	1823820	8
Insertion	Chr5	21807624	21807624	1	LOC_Os05g37270
Insertion	Chr7	7179441	7179442	2
Insertion	Chr8	17969694	17970201	508
Insertion	Chr9	3274622	3274622	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	17220860	17462738	LOC_Os06g30260
Inversion	Chr6	17220871	17462743	LOC_Os06g30260

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	730986	Chr11	690906
Translocation	Chr11	8196297	Chr4	13912048
Translocation	Chr8	10047760	Chr5	17972224
Translocation	Chr10	21488357	Chr4	13998989	LOC_Os10g40140
Translocation	Chr12	27080746	Chr6	8332724