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| Mutant Information |
|---|
| Mutant Name | FN3806-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3806-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 4416671 | G-T | HET | ||
| SBS | Chr10 | 4879849 | T-C | HET | ||
| SBS | Chr11 | 10531937 | C-T | HET | ||
| SBS | Chr11 | 24567994 | T-G | HET | ||
| SBS | Chr12 | 10034894 | G-T | HET | ||
| SBS | Chr12 | 10147240 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g17710 |
| SBS | Chr12 | 24242495 | C-T | HET | ||
| SBS | Chr2 | 17277921 | T-C | HET | ||
| SBS | Chr2 | 20226475 | G-A | HET | ||
| SBS | Chr2 | 25884573 | A-G | Homo | ||
| SBS | Chr2 | 9199307 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g16180 |
| SBS | Chr3 | 12626579 | C-T | HET | ||
| SBS | Chr3 | 14211679 | G-A | HET | ||
| SBS | Chr3 | 22580168 | A-G | HET | ||
| SBS | Chr3 | 9470499 | C-T | HET | ||
| SBS | Chr3 | 9863238 | T-C | HET | ||
| SBS | Chr4 | 1265728 | C-A | HET | ||
| SBS | Chr4 | 15345148 | G-A | HET | ||
| SBS | Chr4 | 15513865 | G-A | Homo | ||
| SBS | Chr4 | 4007977 | C-T | Homo | ||
| SBS | Chr5 | 13474709 | T-C | HET | ||
| SBS | Chr5 | 16506911 | C-T | HET | ||
| SBS | Chr5 | 25725399 | T-A | HET | ||
| SBS | Chr6 | 21582156 | G-A | Homo | ||
| SBS | Chr6 | 27509436 | G-A | HET | ||
| SBS | Chr6 | 28871108 | A-T | HET | ||
| SBS | Chr7 | 1065828 | A-G | Homo | ||
| SBS | Chr7 | 13238086 | A-T | HET | ||
| SBS | Chr7 | 13629242 | C-T | Homo | ||
| SBS | Chr7 | 18331074 | C-T | HET | ||
| SBS | Chr8 | 14482333 | C-T | HET | ||
| SBS | Chr8 | 22283208 | G-A | Homo | ||
| SBS | Chr8 | 3997975 | G-T | Homo | ||
| SBS | Chr8 | 8862514 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g14730 |
| SBS | Chr9 | 1059594 | G-A | HET | ||
| SBS | Chr9 | 12081052 | T-C | Homo | ||
| SBS | Chr9 | 8435606 | C-T | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1634045 | 1634051 | 6 | |
| Deletion | Chr3 | 2066184 | 2066185 | 1 | LOC_Os03g04450 |
| Deletion | Chr4 | 5993401 | 5993411 | 10 | |
| Deletion | Chr1 | 9716539 | 9716541 | 2 | |
| Deletion | Chr7 | 11872001 | 11880000 | 7999 | 2 |
| Deletion | Chr5 | 19289674 | 19289694 | 20 | |
| Deletion | Chr4 | 19685260 | 19685262 | 2 | |
| Deletion | Chr7 | 20025703 | 20025704 | 1 | LOC_Os07g33500 |
| Deletion | Chr2 | 25826918 | 25826924 | 6 | |
| Deletion | Chr6 | 28470114 | 28470116 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 10369028 | 10369029 | 2 | |
| Insertion | Chr4 | 14896425 | 14896425 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 11476506 | 12403940 | |
| Inversion | Chr7 | 11476509 | 11871526 | LOC_Os07g20544 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 4126723 | Chr10 | 10547348 | |
| Translocation | Chr3 | 8909867 | Chr1 | 3548841 | LOC_Os03g16150 |
| Translocation | Chr10 | 10189304 | Chr4 | 14595105 | |
| Translocation | Chr7 | 11476571 | Chr2 | 33705174 | LOC_Os02g55010 |
| Translocation | Chr7 | 11879891 | Chr2 | 33661054 | 2 |
| Translocation | Chr12 | 19680758 | Chr1 | 3548841 | LOC_Os12g32620 |
| Translocation | Chr12 | 19683027 | Chr11 | 13117280 |