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Mutant Information

Mutant Name	FN3814-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3814-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13732341	G-C	HET
SBS	Chr1	22511530	G-A	Homo
SBS	Chr1	23235255	A-T	HET
SBS	Chr10	18694206	C-A	Homo
SBS	Chr10	6130450	A-G	HET
SBS	Chr12	16773654	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g28360
SBS	Chr2	28205289	G-T	Homo
SBS	Chr3	11778809	G-A	Homo
SBS	Chr3	26382394	T-G	HET
SBS	Chr3	29406330	G-A	HET
SBS	Chr3	32452152	C-T	HET
SBS	Chr5	25016770	C-T	HET
SBS	Chr6	21627839	A-G	HET
SBS	Chr8	22998548	C-A	HET
SBS	Chr8	333794	T-A	Homo
SBS	Chr8	6809555	A-C	Homo
SBS	Chr9	19393432	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g32490

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	2571328	2571330	2	LOC_Os04g05160
Deletion	Chr8	5185001	5245000	59999	10
Deletion	Chr8	5935232	5935233	1
Deletion	Chr4	9671493	9671494	1	LOC_Os04g17660
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr4	13420370	13420371	1	LOC_Os04g23470
Deletion	Chr3	13482512	13482531	19
Deletion	Chr8	16989516	16989517	1
Deletion	Chr12	17996187	17996188	1	LOC_Os12g30050
Deletion	Chr6	19697888	19697893	5
Deletion	Chr11	20227323	20228175	852
Deletion	Chr10	21809048	21809051	3
Deletion	Chr6	23047610	23047612	2	LOC_Os06g38820
Deletion	Chr8	26585795	26585796	1
Deletion	Chr1	27428083	27428084	1
Deletion	Chr5	29466955	29466963	8

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	16890996	16890998	3
Insertion	Chr12	15687415	15687415	1
Insertion	Chr2	33006996	33006997	2
Insertion	Chr3	2192907	2192907	1
Insertion	Chr4	9643578	9643608	31
Insertion	Chr6	1233194	1233194	1
Insertion	Chr6	13454925	13454927	3
Insertion	Chr6	16047137	16047418	282
Insertion	Chr7	12283617	12283620	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	13458080	13458597	LOC_Os03g23250

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	748149	Chr11	718022
Translocation	Chr10	3458833	Chr2	6629962	LOC_Os02g12680
Translocation	Chr11	12018973	Chr2	20904372	2
Translocation	Chr11	12019941	Chr2	20904376	LOC_Os02g34850
Translocation	Chr11	13608124	Chr5	15429066
Translocation	Chr8	13852224	Chr2	16736672	LOC_Os02g28320
Translocation	Chr6	17874850	Chr5	12666964
Translocation	Chr2	18249830	Chr1	15324159
Translocation	Chr11	24566768	Chr1	14049322	2
Translocation	Chr11	28772452	Chr3	11169112	LOC_Os11g47640