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| Mutant Information |
|---|
| Mutant Name | FN3817-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3817-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11693945 | G-A | HET | ||
| SBS | Chr1 | 11693946 | G-A | HET | ||
| SBS | Chr1 | 11693948 | G-A | HET | ||
| SBS | Chr1 | 13555566 | T-C | HET | ||
| SBS | Chr1 | 13814695 | A-T | HET | ||
| SBS | Chr10 | 4558240 | C-G | HET | ||
| SBS | Chr11 | 10420006 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g18480 |
| SBS | Chr11 | 13474347 | A-G | HET | ||
| SBS | Chr11 | 2768701 | T-G | HET | ||
| SBS | Chr2 | 26600783 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g44070 |
| SBS | Chr2 | 26780328 | G-A | HET | ||
| SBS | Chr3 | 34308384 | G-T | HET | ||
| SBS | Chr3 | 3995173 | C-T | HET | ||
| SBS | Chr4 | 10534193 | G-T | Homo | ||
| SBS | Chr4 | 19003237 | G-A | Homo | ||
| SBS | Chr4 | 210668 | T-A | HET | ||
| SBS | Chr4 | 27504832 | T-C | HET | ||
| SBS | Chr5 | 12224683 | A-T | HET | ||
| SBS | Chr5 | 22135266 | G-A | HET | ||
| SBS | Chr5 | 22348475 | T-A | HET | ||
| SBS | Chr5 | 4440148 | C-T | HET | ||
| SBS | Chr5 | 8821010 | A-T | HET | ||
| SBS | Chr5 | 8821013 | A-G | HET | ||
| SBS | Chr6 | 21922484 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g37120 |
| SBS | Chr6 | 23230983 | C-G | Homo | ||
| SBS | Chr6 | 7956690 | A-T | HET | ||
| SBS | Chr7 | 15025662 | G-T | HET | ||
| SBS | Chr7 | 16443538 | G-C | Homo | ||
| SBS | Chr8 | 15238358 | C-T | Homo | ||
| SBS | Chr8 | 778671 | T-C | Homo | ||
| SBS | Chr9 | 10313405 | C-A | Homo | ||
| SBS | Chr9 | 19077612 | C-A | Homo | ||
| SBS | Chr9 | 6735634 | G-C | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 9957509 | 9957512 | 3 | |
| Deletion | Chr10 | 10059001 | 10127000 | 67999 | 10 |
| Deletion | Chr1 | 11517401 | 11517405 | 4 | |
| Deletion | Chr5 | 14097629 | 14097630 | 1 | LOC_Os05g24380 |
| Deletion | Chr6 | 28226056 | 28226062 | 6 | |
| Deletion | Chr1 | 28293013 | 28293019 | 6 | |
| Deletion | Chr2 | 30216881 | 30216882 | 1 | |
| Deletion | Chr6 | 30832126 | 30832130 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 23462455 | 23462455 | 1 | |
| Insertion | Chr2 | 4783111 | 4783111 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 5035036 | 5236462 | LOC_Os03g10030 |
| Inversion | Chr11 | 17555816 | 18506813 | LOC_Os11g31640 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 17040773 | Chr4 | 27726338 | 2 |
| Translocation | Chr11 | 17041112 | Chr3 | 13482099 | LOC_Os11g29370 |
| Translocation | Chr11 | 17555801 | Chr4 | 27727767 | LOC_Os04g46760 |